RNA id: XR_006247126.1



Basic Information


Item Value
RNA id XR_006247126.1
length 136
RNA type snRNA
GC content 0.46
exon number 1
gene id LOC122324256
representative True

Chromosome Information


Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 2330141 ~ 2330276 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAAAAGGGCATCTGCTGTGAATGGCATAGCTGTGGAAGGGATTCTCTGACACAGTTACGGAATCGCTATCAAGAGATTTCGGATGCACAATTTTTAAGACTCGAGGCTGCTAATGATCGCTGATCTTGGCGCCTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191825 lncRNA upstream 64706 2265217 ~ 2265435 (+) True G129916
TU191792 lncRNA upstream 188836 2139892 ~ 2141305 (+) False ppp1r8a
TU191780 lncRNA upstream 247521 2082278 ~ 2082620 (+) True G129886
TU191775 lncRNA upstream 273259 2056405 ~ 2056882 (+) True G129881
XR_006247045.1 lncRNA upstream 358349 1966740 ~ 1971792 (+) True LOC122323678
TU191849 lncRNA downstream 12759 2343035 ~ 2343239 (+) True G129936
TU191855 lncRNA downstream 21022 2351298 ~ 2351565 (+) True G129942
TU191860 lncRNA downstream 48807 2379083 ~ 2379355 (+) True G129947
TU191894 lncRNA downstream 398189 2728465 ~ 2734183 (+) True G129974
TU191899 lncRNA downstream 423748 2754024 ~ 2785827 (+) True G129979
XM_043218444.1 mRNA upstream 2260 2322401 ~ 2327881 (+) True rab42a
XM_043218231.1 mRNA upstream 12108 2311270 ~ 2318033 (+) True ctps1a
XM_043216947.1 mRNA upstream 148414 2153835 ~ 2181727 (+) True foxo6b
XM_043217844.1 mRNA upstream 188809 2134652 ~ 2141332 (+) True ppp1r8a
XM_043217845.1 mRNA upstream 188809 2134652 ~ 2141332 (+) False ppp1r8a
XM_043218125.1 mRNA downstream 1457 2331733 ~ 2341123 (+) True gmeb1
XM_043218123.1 mRNA downstream 1457 2331733 ~ 2341123 (+) False gmeb1
XM_043218191.1 mRNA downstream 50345 2380621 ~ 2564556 (+) True ptprua
XM_043218192.1 mRNA downstream 50345 2380621 ~ 2564556 (+) False ptprua
XM_043218195.1 mRNA downstream 50345 2380621 ~ 2564556 (+) False ptprua
TU191722 other upstream 356757 1970692 ~ 1973384 (+) False LOC122323678
XR_006247023.1 other upstream 657800 1657298 ~ 1672341 (+) False LOC122323556
TU191508 other upstream 1223568 1072151 ~ 1106573 (+) True G129682
TU191918 other downstream 455649 2785925 ~ 2786348 (+) True G129993
TU191942 other downstream 559413 2889689 ~ 2893492 (+) False serinc2
TU191970 other downstream 640411 2970687 ~ 2978416 (+) False phactr4a
TU192043 other downstream 762791 3093067 ~ 3093714 (+) True G130077
TU192216 other downstream 1429591 3759867 ~ 3760985 (+) True G130208

Expression Profile