RNA id: TU201576



Basic Information


Item Value
RNA id TU201576
length 1076
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id G136460
representative False

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6274754 ~ 6302976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CCTCAACACATAAAACCGTCTTAATTTAAGCGCTCGCACACTCTACGAGCGAACCTGTCCGTGCGCTTCAACCTCGAGCGAATCGGAGCAGCTCACCTTCTGCGCAGCTTCCGCAAACTGCTTGGCCCCGTGCAGCAGGTGGCTGGTTTTCTCGTCGGCCCTCATCAGACGCTCTCCTCGTTCGCTCAGGACCTGGCTGGCCCTCCTCATCACGCTCCCCATCTTCCTCACCGCCGGAGGAGACGGGCTGCTCCGGCTCCGGCTCCTGGACGCTTTGACCGCTTGTCGCTGAGCCTGACCCTGGTTTGCCGTCATACTGTTCTTCATTCTGTTCAAAAAAATCTTGCAGCGGTAGATAACCATATTAACAGAACAAGCATCTGAAAGAAAGAGCGCATGATAGCGTTGGGGTTCTCCAAACATAATTCTTTCAGCAAAGAGGTCCGTCTCTCTCACCTCCCATTAGCTTCTGCTGACAGTTGATAAAGCTAGTTTGGCTCTGAGCTCCGGGGCTCTTCTTGTTCTCCGGAGCGCCCGGTGTCTTCTGCTCCGCGGGGGACGCCGGCTCGGTTCGGGCAAGCTTGGCCTCCCAGTAGTTTCGGCAAGCGTGGTACAGGACCTgcacaaacatgcatttctcTGCAGCCGAGCTGGCCACCCATTGGTCAGTGGTGCGGTCCAACACTAGGTCGAACTCGGGAGTGTCCTGAAAGCATGCCCTCAAGTCAGAATAACGGACTGCGCTGGAAAACAAAAGCCGCGTTAAGGAGGACGGTCACCTTTTCGGGGTTGATGCCGTTGACCTGCCGGAGCTGCTCCACGGACCACTGGGACCTTTTAGCCAGCTGTCTGGTTCCTCGGTACCTCTTCACTTTAGTGATGAGGACTTGAGCTGGTCTGCTGTTCGTGAGACAGGCAGAGGTAGGTCAAGTAATCCTTCTTACGTCCCGTGTTGAGGAAGGACAGTCCTTTCCTCTTCGTCCTCCTCCTCACTTCAATGGCTACCAGTAACTTTTCATCTCTCGGGGCAAAGATCTCACGGCTGATGGCTGACTGAATGTTCATCTTCAAAATGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201549 lncRNA downstream 27863 6246263 ~ 6246891 (-) True G136440
TU201506 lncRNA downstream 69316 6205090 ~ 6205438 (-) True G136416
TU201487 lncRNA downstream 129093 6128498 ~ 6145661 (-) True G136398
TU201458 lncRNA downstream 224121 6048968 ~ 6050633 (-) True G136388
TU201429 lncRNA downstream 414131 5859953 ~ 5860623 (-) True G136368
TU201648 lncRNA upstream 105368 6383432 ~ 6398110 (-) True G136506
TU201900 lncRNA upstream 849149 7127213 ~ 7130585 (-) True G136689
TU201908 lncRNA upstream 855684 7133748 ~ 7136993 (-) False LOC122324389
TU201909 lncRNA upstream 855684 7133748 ~ 7139291 (-) True LOC122324389
XR_006247160.1 lncRNA upstream 857710 7135774 ~ 7138782 (-) False LOC122324389
XM_043219272.1 mRNA downstream 17307 6254715 ~ 6257447 (-) True cgrrf1
XM_043220009.1 mRNA downstream 42087 6218511 ~ 6232667 (-) True nid2b
XM_043220008.1 mRNA downstream 42087 6218511 ~ 6232667 (-) False nid2b
XM_043220012.1 mRNA downstream 76599 6193434 ~ 6198155 (-) True zfp36l1b
XM_043219238.1 mRNA downstream 116145 6149450 ~ 6158609 (-) True crip2l
XM_043218868.1 mRNA upstream 34266 6312330 ~ 6315814 (-) True gjd2b
XM_043219941.1 mRNA upstream 39735 6317799 ~ 6321279 (-) True actc2
XM_043218759.1 mRNA upstream 72766 6350830 ~ 6368755 (-) True meis2b
XM_043218758.1 mRNA upstream 72766 6350830 ~ 6367966 (-) False meis2b
XM_043218837.1 mRNA upstream 132898 6410962 ~ 6413971 (-) True si:dkey-63b1.1
XR_006247217.1 other downstream 343632 5924475 ~ 5931122 (-) False zpax2
unassigned_transcript_2505 other downstream 448023 5826620 ~ 5826731 (-) True trnal-caa_53
unassigned_transcript_2504 other downstream 448531 5826112 ~ 5826223 (-) True trnal-caa_52
unassigned_transcript_2503 other downstream 449039 5825604 ~ 5825715 (-) True trnal-caa_51
unassigned_transcript_2502 other downstream 450055 5824588 ~ 5824699 (-) True trnal-caa_50
TU201658 other upstream 134415 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201662 other upstream 154766 6432830 ~ 6451499 (-) False LOC122324366
TU201897 other upstream 847684 7125748 ~ 7228963 (-) True G136688
TU201939 other upstream 1018797 7296861 ~ 7305724 (-) True G136707
TU201958 other upstream 1058087 7336151 ~ 7340436 (-) False LOC122324874

Expression Profile