RNA id: XM_043219462.1


Basic Information

Item Value
RNA id XM_043219462.1
length 4989
RNA type mRNA
GC content 0.42
exon number 15
gene id snx17
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10895988 ~ 10922882 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaatcacaggCTGCTTTTACAAAATTCAAGGTATTGGACTGTTATAGATCATTCTCGACCATACTATTGCCGTTTATATTCAGTCTGgaaatttaaaataagacaCATTCCACAAATACGGatgacttttttcatttaacgGCGTACAGCCCCTGTTGTTTAAATAAGTTAATGTTTGAATAACATatcaaacataaaattaacCTCGTATAACAACAAGTAGTTTGgctacaaaaatgtattgatcCCCCCCTTAAATGTGGATTTTGGACTGCTCCAACTCAGGGGTGACGcatagaaataaaattgtaaaataaaataaatgtttaaaaagtcaattaaattgaatttaaatatataaagaaatttaattaaaccaaaggtactgtaataaataaacgaaCAAATAAACATCTTTCAGATATGAGACTTTTAAGTTTATCCATAATAATCCTAAAaacaacgacaaaaaaaactatggtGCCCTGTTCAGTTAATTTAGGCAATCTTATTGCCCATTTTGgtgctttttaattaataattttatattttttgtccaATGTTTATTGCTATGAGTTGCAGAAAGATTATATTAGACATAACAcgcataaaaatagaaaatataattatgtttgACCACCTTGAGTAAACTTTCGATACAAAAGTTAAGCGcctcctttcatttttttttttttttttttgagcgaaAAAAGACAGGGGGCGTCAAATACCTCACATCACAAAGATGATTTAATCAGCTGTCTCTGACAAATGATTTagctaatatttaaatacgCAGTTTCACcgtctgttttgtttgtatcACACAGCCACCTTAAAGCCCACTCAAATGTTAAACTTAAGTTTAAACCCTTACTCGTGCGCGTTCGTAACGTTACGGAGAGCTTGTTTACTAAAAAACTACGCTCGCGACCCGCTCGTGCCAAACTGAACACTTTTACGCAATCCCTCCCCCCGCTCCAGAACAATGGTTTGATCCAGACTGTTGCAACGCTTCGGGAGAGCGCAGATACATATTGAATACATTACAGCGGAGCTGCTCCATCCACGGCGATCGAAGGTTTCGCTTCAACGCAGACCGACGCGTGTTCTCCCTAACAAGTTGGAGCACAACATCGCTATTTGGAGATGCATGCTGCGACAAAACAGTCTCTTGGTTTCGCTCTCCACACTCGTCCGTGCGTACCAACGTAGGTGGAAACGGGGGCTGCGGACAGCCGCGGAGCACCTTTCCGTGGACTAATCTGAAAGTTAATTGGACCGTGGGCCTGGCGACGACGCTCGCGTGTTTCGCAGACTCGACTCCCACGCCGTTTCGCGTCGCGCGGGGAAGCGAGGGGACGGATTTTGCGACACGCCGTCGACAATGAACGTGGAACTACCTCCAGTCGCAACATGGCTGCTGCTTAGATGTCTATTGGAAAAGTTCAGCCCTGAACATTGAGAAAGTTTCTGAAATAATCCGCGTCGCGGGAGAGGAACTTTTCTGGCGTAATTCGGCTCTGGACCGGACCGGACCGGACGGGACCGCGCGGGGAATCGGAGCGAGTGCGGCTCGCCGTCATTCAGCCTGGTTCCTGCATGACAGCAGACCGACACCGAGGGCTTTCCGTGAACACTCTCGCTTTTTAACTCGGTCAGAGACGTCTGATTCTACCGCGGAAGATGCACTTCTCCATCCCCGAGACGGAGGTCCGCTCCGACGAAAACGGCTCGACTTATGTGGCTTACAATATCCATGTGAACGGTGTTCTGCATTGTCGAGTACGTTACAGCCAACTCCTGGGCCTCCACGAACAGataaaaaaagaatatggaAATAATGTGGTGCCGGCTTTCCCACCAAAGAAGATCTTCACCCTTACGCCGGCTGAAGTTGATCAGAGGAGAGAACAGCTAGAGAAATACATGCAAGCTGTTCGTCAGGACCCCATTCTGGGATCCAGTGAGATGTTCAACAGCTTTTTGAGGAAAGCTCAACAGGAGACCCAGCAGATTCCCACTGAGGAGGTGCAGCTAGAAATATACCTGTCCAATGGCCAGAAGGTTAAAGTCAACATCCTCACATCGGACCAGACTGAGGATGTTCTGGAGgcTGTGGCTTCAAAGCTCGACCTTCCTGATGAGTTGGTGGGATATTTTAGCCTCTTCCTGGTTCAGGAGAGGGGGGATGGGGGCTGCACGTACGTGAGAAAACTGCAGGAATTTGAGCTGCCCTACGTGTCCATCACCAGCCTGCATAGCCCTGACTACCGTATCGTCCTCCGTAAAAGCTACTGGGACACAGCGTACGACTGCGATGTCATGGATGACCGCGTGGGACTTAACTTGTTATATGCTCAGACGGTGTCTGACATAGAGCGGGGATGGATCCTCGTGAACAAAGAGCAGCACAGACAGCTGAAATCCCTGCAGGAAAAAGGCTCAAAGAAGGAGTTCATCAGATTGGCTCAGACTCTCAAGTACTACGGCTATATCAAGTTTGATCCCTGCATCACGGACTTTCCTGAGAAGGGCTGTCATGTTATAGTCGGTGCCGGCAACAACGAACTCAACTTTCACGTCAAATTGCCCAGTGATCAGATGAAAGAGGGCAGCTTCAAAGTCACGCGCATGAGATGCTGGAGGGTCACCTCATCTGTGCCTGTGGCGAATGGTACCGCGAACCCAAGCAGTTCCAGTAAATGTGACGTGAAACTAGAGCTGGCCTTCGAGTACTTGATGAGCAAAGACCGTCTGCAGTGGGTCACCATTACCAGTCCACAGGCTATCATGATGAGTATCTGTCTGCAGTCTATGGTAGATGAGCTGATGGTGAAGAAATCTGGCGGAAGCATTAAAAAGATGCAGAAGAAGCGAGTGAACGGCTCGTTCCAGCGCTCTGACAGTCAGCAAGCTGTGAAGTCTCCTCCATTACTGGACTCCCCTGATCCCAGCCGTGAACAAGTAGTCAAACTCTCTaccAAGCTGTCTTCTGTCTCCCTGAGAGGACTTAGTTCTTCCAACTCAGCCAGTGACATCAGTGGCAATGATTTCCATGGAAACTACGCCTTTGAAGGAATAGGGGACGATGACCTGTGATGGAGTCATCCTCAAAGACTGGACTAAAGGAGACGGATTCATTTAGCGCTTTCTCTGTGATGAGTGTAGTTTATTAGATGCCCAGTTCTGCAGTATTGTAAtccacttttgaaaaaaaaaaaaaaaatcaagggtCTCAAAAATAGCCAATGAAGTACTTTTATGAGAGGCCTCAGATTCCGTGCTCGCTCAGTAAAAAGTAACAGAAATGGGATAATTTCAAATATGAGGCATAATTAGAGACAACGTTAACTTTTAAGTTAATACAGGGTTACATAGGCACCTCAGGGCATGTCGCTACATTCAAGAGAGGCTGTGATGAAAGTTTCAGGCTTTATTGAATCGTACTTCCTTACTAGAGACACAAAACTGTGCTTTTCCTCTCATATCATCATCTGGCAGACACAAAATTCAACTGCTCTTGACAGTAGTTGCCTACTAGGGTAAAATCCATACCAGCAAACTGTTGATATGTTCCTTTTAAAATCAGTTGagaatattatttaatagagacGTGCTTCGTATCGTTCAGTGTGCCAATGTTGTTCAAACTATTGCGTGGTAGCATCAATACGACCCATGGCGTGGTAGATCTCTGCAGCTTTCtggggttttttgttgttgtttttttttctggacgCCTACTGCATATTCGTATTGCATATCCTGGTTGAAAACACACATCTTTATTGTGGCCTGCTTTCTCTCTGCCTTATGCTGATTCAGACGCCTTACAGTTTAACTTctcaaatttcaaattaaatgtagcGCCAGGCACGTTTGCTAAAAATCTTCTCTTTCTGGCCTAAGCTGTGTCCTGAAATCTCGCTTTGTTTTGGTGTGTTCGGCGGGCCCGCTTGCACTAGCTGAacttatgtcttttttttttttttttttttttttttttttttttttttgcacagtgtTAAGATAGATGGCTTGGGTATTTATTGAGATAGTAAAACGGTGGGAAAACATCCTGGAACATTCGCAAGAGGTTTGTaggtctgtgtgtttttttttttttttttttttggtttgtttttttttttccttgaaccaatattttaaaataggttATTCATAAATGCCAAAATTATACTTCACTAAAGCATTTTGCACAAAAATCATGGTAATGTcacttttataaatgtacatgcaatttaaaaaaaaaaaattcagaatatTTACTAATATCTGTATTATCTTAGTATGTTACAAACAAGTACAGTTGATCAAATATAATCCAggctgtgtaaaaaaaaaatatagaaactaACATTTATCAGTGTTTACAAAATTGTAGAAAATTGTTGAAAGAGTGTTTACAAATTTCACATCTAAGCTTCAGTGATTGTCTTAGTAcactttatgtatttcattttgaagaatatcattccagtttttgtttttattatatacatataatccATTCTGTATTTTACTAAATACATTGTGGCAATCATCTCAGAGGACTGTGATCACATGGTGCTTGGGAAATGgctgtattttacatttatgctgGTTTTTTGACTGCAGTCATAGTCCTATTGAATGAAATTCCCATATTCTTCATCCcagatagagatatatatatatatatatatatctcctccCATGTGCAGAATGCGTAAAATGCTCATGTCTGCTGTGTGGCTGATTATTTTTGAGCTGATGACTGTAATTTGTGATTGCCATGTTCAGAGTGTTCACCAgcatcatcagcagcagcatctAGGATGAAAAGGATAAACATCTATACTCCTAAACCGTGTACATCGCTCATAAGtcagtatgatttatttttcaaattctcacttcattttaaattcaagaATGGAGAAGTTAGAGCCTTCTGGGTTTCAATAAATTTAGGTGCCAAATGAC

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0007165 signal transduction biological_process
GO:0005769 early endosome cellular_component
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203205 lncRNA downstream 89208 10806521 ~ 10806780 (-) True G137588
TU203194 lncRNA downstream 109653 10785953 ~ 10786335 (-) True G137578
TU203189 lncRNA downstream 116582 10779130 ~ 10779406 (-) True G137573
TU203172 lncRNA downstream 141797 10753957 ~ 10754191 (-) True G137560
TU203171 lncRNA downstream 142730 10752847 ~ 10753258 (-) True G137559
XR_006247258.1 lncRNA upstream 12064 10934946 ~ 10937374 (-) True LOC122325152
XR_006247259.1 lncRNA upstream 12064 10934946 ~ 10937350 (-) False LOC122325152
XR_006247254.1 lncRNA upstream 190914 11113796 ~ 11114925 (-) True LOC122325111
TU203241 lncRNA upstream 191009 11113891 ~ 11114833 (-) False LOC122325111
TU203252 lncRNA upstream 268777 11191659 ~ 11194847 (-) True G137621
XM_043220173.1 mRNA downstream 7761 10871839 ~ 10888227 (-) False si:ch211-278j3.3
XM_043220171.1 mRNA downstream 7763 10871839 ~ 10888225 (-) True si:ch211-278j3.3
XM_043220172.1 mRNA downstream 8553 10871839 ~ 10887435 (-) False si:ch211-278j3.3
XM_043220174.1 mRNA downstream 11428 10871839 ~ 10884560 (-) False si:ch211-278j3.3
XM_043219946.1 mRNA downstream 25253 10839146 ~ 10870735 (-) False si:dkey-71h2.2
XM_043219454.1 mRNA upstream 2581 10925463 ~ 10932315 (-) False eif2b4
XM_043219453.1 mRNA upstream 2581 10925463 ~ 10932315 (-) True eif2b4
XM_043218784.1 mRNA upstream 139032 11061914 ~ 11067406 (-) True si:ch211-142k18.1
XM_043218785.1 mRNA upstream 208542 11131424 ~ 11136612 (-) True LOC122324412
XM_043220522.1 mRNA upstream 219063 11141945 ~ 11182183 (-) True LOC122325476
TU203048 other downstream 171919 10721921 ~ 10724069 (-) True G137469
TU203003 other downstream 325251 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 957111 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1560927 9330137 ~ 9335061 (-) False pcsk9
XR_006247227.1 other downstream 1617023 9265372 ~ 9278965 (-) True bloc1s2
unassigned_transcript_2506 other upstream 9680 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 209744 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 252312 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 444041 11366923 ~ 11368490 (-) False gsx2
XR_006247367.1 other upstream 706246 11629128 ~ 11629249 (-) True LOC122325628

Expression Profile