RNA id: XM_043222327.1


Basic Information

Item Value
RNA id XM_043222327.1
length 798
RNA type mRNA
GC content 0.38
exon number 3
gene id pdzk1ip1
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8890622 ~ 8892199 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAAATTCAGATAGTTTCCTGGTTAGAGGAAGGATACAGGTCTTCGACTCGAGCAGCTGTTTCGATACGTTAGCGGGTGTGAAGAGGACGAACATGGGGAAACCGGTGGCTGTGTTTTACTGGCTTCTGCTCGCCCTGGGACCGGCCGCGGCTCAAGCAGAGAAAGCAGAGCAAGCCCTCCCAAACTGGCTCACGGGGATCATCGCCGTCGGAGTCTTCCTCTTTCTGATCTTCGTCGCCTTCCTTGTAAACAAAGCCTGGTGCGAAACTCCAAGgagcatCGACAACCCTAAAGTGCTTGATCATCAGACCGATGAAAAAGTGACCGAGATGTGATGAAGGAAACGTCCGCATTCGGCTGACTCAGCGCGCCATGTTAACCTTGTTTCTTGTTGTAATAAGTTAGAAATTTAATAGCTGATGCAGGTTATCTTTTACCAAAGGTTAGCAGTgatttttgattaagtttttttttacattttattacacattaattCTAGTTCCTTTTAAAGggcatgttgttgttgttgttgtaacaATTTGTGAACACTTTAATATATTAGACATTCAGTATATCAAGTATTCAATACTTGTTGTGCAAACTTCtttaagcaatattaaaaaaaaaaaatatatatatttaataatatgaataaaatcaaatatgctACCTTTCAAAAGTCTTGGTTTGGTAGAACTTTGTtgtaggctgcatttatttgatcaaatacacaataatactgcaaaatattattacaatttaaaataacttgtatTAAATTtggaattgttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223369 lncRNA upstream 35371 8854822 ~ 8855251 (+) True G150928
TU223357 lncRNA upstream 95336 8794161 ~ 8795286 (+) True G150916
TU223312 lncRNA upstream 116987 8772636 ~ 8773635 (+) True G150886
TU223276 lncRNA upstream 323309 8566961 ~ 8567313 (+) True G150860
TU223274 lncRNA upstream 329449 8560402 ~ 8561173 (+) True G150858
TU223379 lncRNA downstream 365 8892564 ~ 8894757 (+) True G150936
TU223380 lncRNA downstream 6021 8898220 ~ 8898434 (+) True G150937
TU223381 lncRNA downstream 6847 8899046 ~ 8899466 (+) True G150938
TU223384 lncRNA downstream 7377 8899576 ~ 8900195 (+) False G150939
TU223382 lncRNA downstream 7600 8899799 ~ 8900972 (+) True G150939
XM_043223371.1 mRNA upstream 4194 8880269 ~ 8886428 (+) False tal1
XM_043223369.1 mRNA upstream 4194 8880298 ~ 8886428 (+) False tal1
XM_043223370.1 mRNA upstream 4194 8880300 ~ 8886428 (+) True tal1
XM_043223373.1 mRNA upstream 4194 8880302 ~ 8886428 (+) False tal1
XM_043223379.1 mRNA upstream 30553 8858464 ~ 8860069 (+) True ier5
XM_043223444.1 mRNA downstream 103772 8995971 ~ 9004905 (+) True tm2d1
XM_043222439.1 mRNA downstream 305825 9198024 ~ 9223536 (+) True frem1b
XM_043222440.1 mRNA downstream 305850 9198049 ~ 9223536 (+) False frem1b
XM_043222443.1 mRNA downstream 331611 9223810 ~ 9227301 (+) True atpaf1
XM_043222442.1 mRNA downstream 336209 9228408 ~ 9235230 (+) True rab3b
TU223279 other upstream 273017 8614289 ~ 8617605 (+) True G150862
TU223137 other upstream 722350 8167449 ~ 8168272 (+) True G150756
TU222560 other upstream 2181731 6708488 ~ 6708891 (+) True G150369
XR_006247622.1 other upstream 2382950 6502914 ~ 6507672 (+) False ccnt2b
TU221839 other upstream 2651265 6238287 ~ 6239357 (+) False npb
TU223385 other downstream 8944 8901143 ~ 8902311 (+) True G150940
TU223397 other downstream 27080 8919279 ~ 8919780 (+) True G150945
TU223398 other downstream 29499 8921698 ~ 8921967 (+) True G150946
TU223418 other downstream 95987 8988186 ~ 8988691 (+) True G150965
TU223769 other downstream 563102 9455301 ~ 9530165 (+) False march2

Expression Profile