RNA id: TU223405



Basic Information


Item Value
RNA id TU223405
length 595
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G150953
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8947116 ~ 8947710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gttgcaataaaaaaataagcataaaattTAAGTTAATAGCCATATTCAAAAAGTCAGAAAAAAGTCAGTTCTCTTCACGAAAACTGTGGTTGCGAATATACTCGTCTAGTTGTCTCTCTTGTGCCTCTGGCGCGGTTTCAATCGCGATCCAATTATGATATTGCGACGCATTGCGATCATATCACGAAACATCTGCCCAAACAGCTTCCCCTCCACAGTCACTAACGCTCAGTCGCTTTAGACACATTGTTTGTCACGATATAGCGCCGCTGCTGAGCTAAGGCGTTCGGCCTTAAATATATGGAGAAAAGCTGCCAGGCATTCAGCGGCTGTCTGATAAATGACCATATTCGGTGCGTTAAACCCAATCTCCCAGCACTGAACACATGAAGAAGAGACGATGGCAGTCTGCAGCCAAGAAACACAGGAGAAACAGCCAGTGATATTTCAGCAGGAGAAGCCTCCTCGATCGCTCGGCACCATATATGAAGAGATAACACTGACGGAAGACTTCTCATTAGCTCGGCTTCATTATGGCTCTTAATTAAGGCCCGGTCTGAAGAAGACAATCTACCAGAGCGATGAGTCACAGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223404 lncRNA upstream 922 8944436 ~ 8946194 (+) True G150952
TU223403 lncRNA upstream 8340 8938403 ~ 8938776 (+) True G150951
TU223401 lncRNA upstream 14328 8932557 ~ 8932788 (+) True G150949
TU223400 lncRNA upstream 15097 8931479 ~ 8932019 (+) True G150948
TU223396 lncRNA upstream 28451 8918063 ~ 8918665 (+) True G150944
TU223411 lncRNA downstream 18833 8966543 ~ 8973285 (+) True G150959
TU223415 lncRNA downstream 25936 8973646 ~ 8973906 (+) True G150962
TU223416 lncRNA downstream 33777 8981487 ~ 8981765 (+) True G150963
TU223417 lncRNA downstream 34406 8982116 ~ 8982356 (+) True G150964
TU223420 lncRNA downstream 47496 8995206 ~ 8995483 (+) True G150967
XM_043222327.1 mRNA upstream 54917 8890622 ~ 8892199 (+) True pdzk1ip1
XM_043223371.1 mRNA upstream 60688 8880269 ~ 8886428 (+) False tal1
XM_043223444.1 mRNA downstream 48261 8995971 ~ 9004905 (+) True tm2d1
XM_043222439.1 mRNA downstream 250314 9198024 ~ 9223536 (+) True frem1b
XM_043222440.1 mRNA downstream 250339 9198049 ~ 9223536 (+) False frem1b
XM_043222443.1 mRNA downstream 276100 9223810 ~ 9227301 (+) True atpaf1
XM_043222442.1 mRNA downstream 280698 9228408 ~ 9235230 (+) True rab3b
TU223398 other upstream 25149 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 27336 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 44805 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 55035 8890643 ~ 8892081 (+) False pdzk1ip1
TU223279 other upstream 329511 8614289 ~ 8617605 (+) True G150862
TU223418 other downstream 40476 8988186 ~ 8988691 (+) True G150965
TU223769 other downstream 507591 9455301 ~ 9530165 (+) False march2
TU223817 other downstream 629969 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 940490 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 975837 9923547 ~ 9963634 (+) False LOC122328159

Expression Profile