RNA id: XR_006247776.1


Basic Information

Item Value
RNA id XR_006247776.1
length 2063
lncRNA type inter_gene
GC content 0.52
exon number 5
gene id LOC122328159
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9923547 ~ 9963634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGTTGTTGCGCATTCTGTTGGCCTCCTAGTTTGTGGACGCGCGCGTGCTGTCGGCTCGGGGATCTCAAGGTGCATCGCGAGCACCTGTGACAGGTTTGACAATCAGCCTACAGACGCGCGATTGAACGCAACGCCGCGCGGGCTCCGCGCGCGCCTCTGCCTGAACCTTGCGCGGCGAAGTTGCGCTTATTTCCCCGGGGGCGGAAAGAGACCGGGTTTCTCTTTGGTCTGCCCATATGCTAATCCGGAGAGGAGCGAGACAGGCGTAACTCTGAACGGATCGCGCGCGCGGACTTCGGAACAATAACTCATCAATTCGCGGCGGGACGCGGTTTAAGCGCGAGCTGCTTGAGTTTCCGCGCACGTCCGCGCGCGGGGGACCGACGGGCAGGCTCGATCACGGCGCCAGCGCTGGGCACTCGGCGCGAACCCGGAGAACAAGTTGCGCGCTTGAGCGCCCGGTCACTCCGGACGAACGCCAGTGGCTGTTTTTCAACTAATCGACGCCGGCTCCCGTCGTGACGTGGTTAACGGGAATAGTTCGCGCTTCGAGCAAACGCACTGCCGCGAAGACCTCTGCTTTTTGACGTTTGCTTGTGGATTAGACACCGCGGTGTCGCGGATGACCCCCGGGTTTCGGCACTCAGAGATGAGAGCTCATCACTGTCCACTAAAAGGAAAAAGAGACCTTGGGAATCAGTGATAAAACACGGAAATGAACTGACCTCAGATCAGGAGTCGGAAGACGAGCGGAGAGTGGGAGTAGCGATGGTGGTGGAGGAGTGAACCCGGAGCAGGTGAACACAGCTGCGGACCGCCATGGGCTCTCTTCCATTGGTCCCGACTCTCCGTCTTTGGGTCTCTGAGAGACGGCAGGGGCCAGCCAGGGAGCGTCGGAGTGGGCAGGCGAGGCAGCTCGCTTTCCCCGCCGGCTACCGGCTCCTCGGCAGCGAGGAGGGAGAGAAATCAATACTGAGGAGAGATGCTGCCAGGGGTCGCCCAACGCTGCCTCCAGCCATGGAGCCATGGGAGCCCGAGTGTTcggctttctctctctcgcagCCCAATCTCAGTCAACTCGCATCAGCTAAAGAGAGGGCCAACAGCCTTGACGCTCTTCATGCAAcaccgagtgtgtgtgtgcttgcgtgTGGTTCTGCCAGAGGGCCTTTCCAGGCTCGGCATCACTTGATAAAACTTTGCCTGCTGGAGAACAAGTAGAAAAAGAATGTCAAAGGTCTTTCTTTCCCCCATCTTTGATTCCTATTTCGCCATGAGTGCACATTCCCCCTGACTGTTGTAATGAGTGCTTGACGGAGATCTCTTTTACGCTAAATCAAGAGGCCTTCTTTTTTCAGTGGTCCTCCTCCTAAGAATGCACAAAGTGCTCTACATCTGAGAGAGCAGTGTGAATCCTTTTTCCACCTGgttttacatgattttttttttttgatggacGCCCCTATGCGAGAGGCTTGGAAAAGGACTCGGCCTTGATTTGTAGGTGAAGCGTTTCACGCTTAGCCTTCCTGGGCACTTTGTAACCTCTTTCACCCTTGACCGTGGTACTTGATGGGTATTAATAACGGTGCAGACCAATCGAGGACATTGCGAGATGGAGAAGTTCCAAAAAAAGTTGCTCCCGCAAGGCTGCAGATCCATTGGGATGTGGACAACTGAAACACGGCCTGAACTAGATACTAACAATTCAGAAAGTGGAGTGCTGGTGGCAGTGGATAGTTCCTTTATCCTTGGATGCTCAAAGGGAAATCGGATTCGGTTTGGGACTAAATCTTGACACCAGGACCACGGACCATCGAGacgtttttcctgtttttctttaatCACTAACGGACATAGCTGGTTTTCGTTAAAACCGTTGTTTTTGTTGAATCGCTTTTTTGCCATCCAGTAAGTATTTTTGGACGATAAAggtaagtttatttttttaaagaagagttttgaaatgtttgaagaCAAGGGacagttaataataaatgagacTGACTTACtgctaatttaaatgtttgattgaacttagggatggatggatatttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223958 lncRNA upstream 26775 9896581 ~ 9896839 (+) True G151334
TU223956 lncRNA upstream 27314 9895441 ~ 9896300 (+) False mef2b
TU223957 lncRNA upstream 28287 9895046 ~ 9895327 (+) True G151333
TU223951 lncRNA upstream 30125 9888200 ~ 9893489 (+) True borcs8
TU223922 lncRNA upstream 161195 9762154 ~ 9762419 (+) True G151308
TU223964 lncRNA downstream 90498 10053918 ~ 10079639 (+) False G151337
TU223965 lncRNA downstream 111416 10074836 ~ 10079639 (+) False G151337
TU223961 lncRNA downstream 111558 10074978 ~ 10080145 (+) True G151337
TU223999 lncRNA downstream 118362 10081782 ~ 10082620 (+) True G151358
XR_006247731.1 lncRNA downstream 173880 10137300 ~ 10140154 (+) True LOC122327864
XM_043223144.1 mRNA upstream 12821 9895748 ~ 9910793 (+) False mef2b
XM_043223146.1 mRNA upstream 12821 9895749 ~ 9910793 (+) False mef2b
XM_043223145.1 mRNA upstream 12821 9895771 ~ 9910793 (+) False mef2b
XM_043223148.1 mRNA upstream 12821 9897255 ~ 9910793 (+) False mef2b
XM_043223147.1 mRNA upstream 12821 9898094 ~ 9910793 (+) True mef2b
XM_043223380.1 mRNA downstream 7202 9970622 ~ 9993441 (+) True gatad2ab
XM_043223381.1 mRNA downstream 8750 9972170 ~ 9993441 (+) False gatad2ab
XM_043222234.1 mRNA downstream 33059 9996479 ~ 10028474 (+) True yjefn3
XM_043223410.1 mRNA downstream 67450 10030870 ~ 10044212 (+) True cilp2
XM_043223411.1 mRNA downstream 107396 10070816 ~ 10072852 (+) True si:ch211-212d10.1
TU223952 other upstream 30125 9888200 ~ 9893489 (+) False borcs8
TU223817 other upstream 343463 9577679 ~ 9580151 (+) True G151232
TU223769 other upstream 393449 9455301 ~ 9530165 (+) False march2
TU223418 other upstream 934923 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 1001647 8921698 ~ 8921967 (+) True G150946
XR_006247720.1 other downstream 7202 9970622 ~ 9993441 (+) False gatad2ab
XR_006247780.1 other downstream 745624 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 842632 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 852715 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 955640 10919060 ~ 10921928 (+) False si:dkey-172o19.2

Expression Profile