RNA id: XM_043222442.1


Basic Information

Item Value
RNA id XM_043222442.1
length 3013
RNA type mRNA
GC content 0.41
exon number 5
gene id rab3b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9228408 ~ 9235230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTTAATGCCGAagcgttttaatatttttgggggCCGCCGCGCGTTCCCAATCCGATTTGAATCGTTTACACTGAGCGCTGAATTAGACCGAATTAGAGCCGGCTGCCCCGCCCTGCCGTGCACACAGCGCGCTTTCAAACAAACCCGTCGACAAACCTCCACAAAACCGCCGTCCTTCGCTAATATACGCGATAACGCGCGCGTAAAAGCAGGCGTTTAGGACGCGTTCACGGCGTCGTCAGGTGCTGCAGCGTCCACAGACGCCCACCTAGAAGAGAAGCAGACGAGAGCCGCGCTTGCATCCGAGATGGCGAAAGCAGATCAACGCTTTGGGCAGAGAGATGGATCTGATCAGAACTTCGACTACATGTTCAAACTCCTGATTATTGGCAACAGCAGTGTAGGAAAGACCAGTTTTTTATTCAGATACGCAGATGACTCTTTTAGCAACTCATTCGTCAGCACGGTCGGCATCGACTTTAAAGTGAAGACGGTTTACCGGAACGACAAGAGAGTGAAGCTCCAGATATGGGATACGGCGGGACAGGAACGGTATAGAACTATTACTACAGCTTACTATAGAGGAGCCATGGGCTTTATCCTCATGTACGACATTACAAATGAAGAGTCCTTCAATGCAGTGCAGGACTGGGCGACGCAGATTAAGACTTATTCTTGGGATAACGCTCAGGTGATATTAGTTGGGAACAAATGTGACATGGATGAAGAGAGGGTGGTGCCTTTCGAGAAGGGGAAACACTTGGCCGACCAGTTAGGCTTTGAGTACTACGAAGCCAGCGCCAAGGAGAACATTAACGTCAGACAAGTATTCGAGCGCTTAGTTGACATTATCTGCGTGAAGATGTCGGAGAGAGTCGATACGGATCCATCCGTGGTCACCGGTGCCAAAACCACTCGGCTAACCGATAAGCCGCCCCAGCTACCTCAGAACTGTTGCTGATTTCCATCTCAACTCATCACTTATCAGCAGCGGGTCCGATGTTGTTTGATGTTCTGTTTTAATGGCGATTGGAACCAACCTGGGGTGCGTTTCATAGTGCGATGCATCGTTAGAAAAAACGTAACTTGCCAGTGACAAAATCGTAGTAACGTGGTTGcgtcattttatttatcaacaGTATAGAATTGCCGTTAATGCCGTCGCACACCGGAAGTGGAGTAAACTTCTGCTAAATAATCAATTAGTTTATAGTTCATTTACACACAGAaccctgttcattattttaaaatcaagtgAACACACtatttaattaacttaaaatgtacttCTCCACAATGTAACTCTGCCTACGTCCgacttaaaatgtttagtttagtcaactTGAAATTGCATGTTAATGTAAGCGACAACTGGAATATTTAAGTTAAGTCAGCCAGGTAACATATTATTAAgttgaaacaacatttttttacagtgtaatttttCCACAACCGTAGCAtcttaactatttaatttttgggttttttttttatatacgaTTCATCGCTTGTTTCCTTTTGCAGCGCCCTCCAGGGTTCCCGTACGCATTTAAGCACAAATagatacaaaatattgtatatacattAAGGCAACATTGTAACAATAATCTATGCTTCTAACCACAGGAAGAGAGTTTCGATGCTGTTCGTAGGAACCACGgtatggggaaaaaaacgaaTCGTTGAATTACGTTGATAACGACTGAACATGCGACCACAGTTGGCTAACAATGCCTCGGGAAACGCACccttgtttgtttgtagctgtCAAACACGTGAAGTAGTTCAGTAATAATAGTACACTTTGAACTTAATCAGTCCATAGGAAACTCAAAGCAGGGACTAGAGCAAAGCACAAAAACTACTACTTGGCTCTCAGAACTTCAGTGTTCACTGCCGAAACTAGATTTAAAACACAATCTGTTATGGCACAATCTTAATAATCTTATGAATTATATATTGAGTGTAGTATACGAGTACTTTTAAAGGATAGTTCAcgcaaaacaagtaaaaattcTGTCGCTTTTTACCTCATTCTCAAGTTGTACCAAACTTGTATGACTATCTCTCTCcgtttgttaaaaacaaaagaagttgTTAACCAAACAGTTGTACTACTATGGAAGTGCTGGTTCGGACCGCACCGATTTGGAGCAACGCGAATgagtaaaatgacaaaatgggtgaactatcccattAGTGAAAGTAAAATGGTGGATATTTTGTTAAAAGGCACACAAATAAACTCAGACTTTTGCAAAGAGGCCATTATGCAGTTTTCGGGGTGGTTTCGatgctttgatttgattggatCAGAAGCAGACGCACGTTGGACTCCATCTACGAACCGCTGGCACTTGCTTTAGCTGTCTTTATgtcgagagagagaaaaaaaaaagtgacgtTTATTAACTTCATGATTAGGTACGCTAAATAAAATTCATGtcttacacaaaaaaaaaaaatatgatatcgAATTCATGTTAAACTTAGTATTGTCAGAAACCACATGTAACAGTTGTGTGTAATAATAGACCGAACACAATCAGCACATTTCATAGTCAGGTGACGTTCGAAGGATAGTCGTCTTCGCTCAAAAACCTCGAGCGGAACGTCGAGATATATCGTGAACTCGTGCCAGGATGTCTTTATATTTCAGAAACTTGTAGCAAATCCTCGTGGGTTCGTGTGTGTATAATCTACTTTGGATTTTTATCAAGTGACGTACGAGTGTTTTATGTAACTATAGTCGAAAATTATTCGaaatgagatatttttaatTCCGATGCCATAGGCcactttttgttttccttgagtagatatttatttttatgctgctggaatatatatatatataggctagtTGTACCTTTGCTGTCAGTGTATTTTGATTTGTAGACAATTTGCACTGGGGCGTACAGTGATTGTACAGTTGTGAATGTTACTTTTAGATGCAATTTGtaacaataaaagcacaaatcACATATAATAAAGGTAATATTTATGTGCCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06108 RAB3B; Ras-related protein Rab-3B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223441 lncRNA upstream 81020 9145211 ~ 9147388 (+) True G150983
XR_006247700.1 lncRNA upstream 157236 9068732 ~ 9071172 (+) True LOC122327612
TU223424 lncRNA upstream 198498 9025901 ~ 9029910 (+) True G150970
TU223423 lncRNA upstream 214556 9013534 ~ 9013852 (+) True G150969
TU223420 lncRNA upstream 232925 8995206 ~ 8995483 (+) True G150967
TU223722 lncRNA downstream 42460 9277690 ~ 9283004 (+) True G151163
TU223740 lncRNA downstream 125198 9360428 ~ 9365322 (+) True G151178
TU223767 lncRNA downstream 220071 9455301 ~ 9464513 (+) False march2
TU223772 lncRNA downstream 237756 9472986 ~ 9475031 (+) True G151194
TU223789 lncRNA downstream 279510 9514740 ~ 9515568 (+) True G151210
XM_043222443.1 mRNA upstream 1107 9223810 ~ 9227301 (+) True atpaf1
XM_043222439.1 mRNA upstream 4872 9198024 ~ 9223536 (+) True frem1b
XM_043222440.1 mRNA upstream 4872 9198049 ~ 9223536 (+) False frem1b
XM_043223444.1 mRNA upstream 223503 8995971 ~ 9004905 (+) True tm2d1
XM_043222327.1 mRNA upstream 336209 8890622 ~ 8892199 (+) True pdzk1ip1
XM_043222441.1 mRNA downstream 869 9236099 ~ 9248034 (+) True nrd1b
XM_043222292.1 mRNA downstream 13457 9248687 ~ 9257262 (+) True axdnd1
XM_043222312.1 mRNA downstream 25532 9260762 ~ 9270135 (+) True tdrd5
XM_043223505.1 mRNA downstream 37524 9272754 ~ 9281842 (+) True fam163ab
XM_043223815.1 mRNA downstream 48556 9283786 ~ 9360315 (+) True rabgap1l
TU223418 other upstream 239717 8988186 ~ 8988691 (+) True G150965
TU223398 other upstream 306441 8921698 ~ 8921967 (+) True G150946
TU223397 other upstream 308628 8919279 ~ 8919780 (+) True G150945
TU223385 other upstream 326097 8901143 ~ 8902311 (+) True G150940
TU223378 other upstream 336327 8890643 ~ 8892081 (+) False pdzk1ip1
TU223769 other downstream 220071 9455301 ~ 9530165 (+) False march2
TU223817 other downstream 342449 9577679 ~ 9580151 (+) True G151232
TU223952 other downstream 652970 9888200 ~ 9893489 (+) False borcs8
TU223980 other downstream 688317 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other downstream 693449 9928679 ~ 9963634 (+) True LOC122328159

Expression Profile