RNA id: XR_006247637.1


Basic Information

Item Value
RNA id XR_006247637.1
length 3759
RNA type transcript
GC content 0.37
exon number 10
gene id LOC122327354
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5145926 ~ 5153856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACTAGAGATGCTTCCGATCGTTAAATGGTGGCTTCTGCTTTTGGCTGCGTTGATGTCGCGGATATTTTGACGCCGAAAATTGCATGCTTgaagctttatatatatttattttgagctttAAACGCCATCCACATACATGGGAAAAGCTGCGACTGTAAAGTATCTGTTAGACTGGTGTATTTTTGGGAGATATTCGCGCTTGTAGCAGGTTCGGGCGCGGCTCAGGTAGAAGAAACCAATTATGCAGCGGGCTGTAACTAATCGCCGTTTATAATTATATCTGGACTTATATCTGGAACAGCCCTGTTAAAACATAGGATGACATTGCtgtattttatcttattattcGTGGACGgCGTGTTTGTTGCAGAAACAGATGAGACAATGTCAGTGATGGAAGGAGATTCCATCACGCTACACACTAATTATACTGAAATACAGAACGATGATACGATACTGTGGATGTTTGGACCTAAAGACTCCCTCATATCTCAAATAACAAGAAAAGGAGATTTTACCTCATTTTTTGTCACTGATGATGTGGGATTCAGAGGCAGATTGCAGGTGGATCAAAACACTGGCTCTCTCACCATCAGAAACACCAGAATCAAACACTCAGGAAAATATAAAGTAACCATCTCTAGTGAAAGCATCACAACCAAGAAATTTAACGTTTTTGTAATTGGTGTTGTTGGTGAGACGGGTGGAGTGAAGTCAGTGTCAGTGATGGAGGGACATTCTGTCACTCTACAGGATTATATTCCTGAAGTACAGCAAGAAGATCTAATAGTGTGGAGGTTTGGAGATAAAGGAATTCTCCTCGGTAAACTTGACATGGAAACCAAAGAGACCTCATTGAACGACGCCGATGAGAGATTCAAAggcagactgaagctggattggactggatctctgaccatcgaGAACACTCGAAGTGAACACGCAGGACTTTATGAAGTGCAGATCAGAGGCCGCGAGAGCTCACAGCAGTTCCTTGTTTCTGTAAATGCTGTTCCTGATCCGGGTCAGTCTCCGGGTGCTATAGCTGGGATAGCTGCTGCTGTTCTGGTGTTTTTGGCTGCAATTGTAGCCGCTATTGTATTTTACTATCGCCGCAAGATCTCTGAACTACAAATGCATGTGGTCGAAGAAAAGTCAGTGGCAGACGGAGATTCTGTTACTCTGAAAACCGATACTGAACTACATAAAGATGATAAGATACAGTGGTGCTATATAGAAGACAACAATCTCGTCGCTGAAATCAGTGGAGCGGCCAGTAAAAGAACATGTGATGGTGTTGATGGGAGATTCAGAAGCAAACTGGTGCTGAATAAGAAGACTGGAGATCTCACCATCAACAACATCATGCTTAATCACTCCGGACTCTACAAACTCAAGATCaccagcaaaaacaaaataacagaaaagagATTCGTTCTTACCGTCGAAATGAGGACCGTGTCAGCGATGGTGGGAGAGCAGGTCCATTTATCAACAGAGATTGAAGTACAAAGCGATGATCTGGTATTGTGGACATTCGGAGCTGAAAACAATCTCGTAGTTAAAGCTGATTTAGGATCGATTAGCACTGGTGCGAGATTCAAAGAGAGACTGGAACTGGCCGAGAACACTGGATCTCTGATCATCAGAAACATCACAATTGCAGACTctggacattttaaactccaggTCATCAACAGCAAACAGAGCCGATTCAAGAGATTCCATGTGACTGTCACTGATTCCACAGTAAACAGAATCAGTGAATCAATTGGATCGATTGAACTGAAGCCCATGCTGAAAGGAGAGGAGAAATAAGTGAAAGAGCGTCAGGGGACAAGTTGAGTCTAATAAGACACGGCCACCAGTGCCACCAATACATTCGCAACAATCGCACTCAATAatatatttctgcttttatgATAAGGAGAAAATAACCTGTAATAATGCTGTTTCATTGAGAAATGAATCATGTTTGAGAACAAATATAGGCCATAGTgaaataatagtttattttatgtacACTGCTTGAGTTGataatgattcagtgactttAATGAATCGATGAGTCAAATATTTAACTTGCTAATCTGTAATATAGACTCTCATTTATCGCCACCTATTGACATAGGTTTATAGAAATAGTCATTTTTTTGAATGACTGTATTATTTATGCCATTTATGGTACTACTATTTTCTCCtggacacattttattttggggcTTTGTGGCAAGTTTTAGCCTATTGAGTGCATGacctaaaattctaaaatatattttgagactgaaagatgttttattttttcaagtgTAACACTATTTTCAAATGCACACATGTCTTTAGGTCGTAAACTTATAGATTTGTAAATATAGGAAGAAGGGAAATTAGAACAATGACTGTGATTGACCATGAAGttaagcaatgcatattattaaaaaaaaaaaaaaaaaaaaaaaaatatttatttaaaataatttgtttatcattatggcattttaataaatttttacttaattttaatttttttgtataaaataacttGTCCTTAAGTGTCCATTCTCTTTTAAGTCAAATTCGTACATTTAATCAGTGAATTAAAATACTAagtttttagatttagatgCAATTTACTCACTTTAGATGTATTTACTCACTGTTTAAAGACATTGATGCATTTAACCtacaattacatatttataaataatgtttttttatatataataaacataaaacgctgaatactgatatttgaaatgaaaagataCTCTGAATATAAAATTAGAAACcaccagtagatggcagcaaGTCACTGTTACAGTTTTTTACGATCAATTTTGCACTAATAACAGAACCATCCTGACATTTTTCATTCAACTAAAACCAATGGTTCAACATGACATAACACCAAAGTGGCCTATTTACtgtttactatttactatttactgTTACAAAATGCAACAAGAATTGCAAGATCTTGCtacaaaaaaatagataattttATGAACTTACAAGCAACTGgcaaaaaacaagcaaagatGCTTCGCTTATTATAAATAGATATGGCAACATTGCAAGAGCGAGTATAGCCTTCAGCATTCCCATAGGAagggcatttaaaaaaaaaaattacgggTTTCATTTTGTCACACGCGTGtactctgtgttgttgtttttgtctctgtgtgccctaccttccgttcctgttaattgtatctTTGTCTTCATCTGTGTcttttaatttagtcaattactttgtatttattccctgtgtgtttcagctccATCGATGTTTTTCTGCCTACCTGCCCGAGGTTCGGCGACAGAATGAAGCTAaatcagactggatctctgaccatcaagAACATGAGAACCAAACACTCTGGACTTAATGAACTACAGATTGATGGCAAAAATGGGACCTCATATGAGAAATTCAGAGTTCATGTCTACAAGTCTCCATCTGAAGATGCTGTTATTGATGCCGGTGAAGCTGAAATGAAGACCATGTCAGTGAAGGAGGGAGATCTGGTTGTTCTTCAGACTAATGTTACTGAAATATATGGTGTGCCTCAGTCAAGTCCTGGCTGATATAGAAGATTGCTAACACTTACTGTTAATGGGTTTTGGGTATTAGCTTTTCCGATTACCAGACAAAACAGATATTTTCTGTCAGGATCTGGTTTCAAGGATATGTACAGAcatggacaaaattgttggtaccctttgggcAATGAAGGAAAAACAACGGTCACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221975 lncRNA downstream 3747 5141247 ~ 5142179 (-) True G150000
TU221918 lncRNA downstream 103999 4932449 ~ 5041927 (-) True G149955
TU221917 lncRNA downstream 108371 4934007 ~ 5037555 (-) False G149955
TU221925 lncRNA downstream 142237 4991610 ~ 5003689 (-) True G149962
TU221926 lncRNA downstream 146750 4991961 ~ 4999176 (-) True G149963
XR_006247653.1 lncRNA upstream 7516 5161372 ~ 5167342 (-) True LOC122327581
TU221955 lncRNA upstream 7539 5161395 ~ 5166906 (-) False LOC122327581
TU221956 lncRNA upstream 7588 5161444 ~ 5166985 (-) False LOC122327581
TU221957 lncRNA upstream 7588 5161444 ~ 5166906 (-) False LOC122327581
TU221992 lncRNA upstream 23833 5177689 ~ 5181252 (-) True G150008
XM_043222616.1 mRNA downstream 22675 5114167 ~ 5123251 (-) False LOC122327332
XM_043222615.1 mRNA downstream 22675 5114167 ~ 5123251 (-) True LOC122327332
XM_043222912.1 mRNA downstream 35265 5108760 ~ 5110661 (-) False LOC122327498
XM_043222911.1 mRNA downstream 35265 5108760 ~ 5110661 (-) True LOC122327498
XM_043223871.1 mRNA downstream 37375 5107353 ~ 5108551 (-) True LOC122328166
XM_043222918.1 mRNA upstream 29085 5182941 ~ 5184286 (-) False LOC122327503
XM_043222917.1 mRNA upstream 29085 5182941 ~ 5184286 (-) False LOC122327503
XM_043222916.1 mRNA upstream 29085 5182941 ~ 5184286 (-) True LOC122327503
XM_043222909.1 mRNA upstream 125622 5279478 ~ 5280923 (-) True LOC122327497
XM_043222587.1 mRNA upstream 173430 5327286 ~ 5341934 (-) False LOC122327315
XR_006247647.1 other downstream 409066 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 557504 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 659583 4482821 ~ 4486343 (-) True LOC122327455
XR_006247645.1 other downstream 712426 4429801 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 373701 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 384700 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 384705 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 490557 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 705491 5859347 ~ 5861317 (-) False timm13

Expression Profile