RNA id: XM_043222909.1



Basic Information


Item Value
RNA id XM_043222909.1
length 1040
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC122327497
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5279478 ~ 5280923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gagcgcgcgcgcgcggtcTGTCAGAGTTCTGCGGGGCTTCTACGCAAGACTCAAAACTCTATAGCTTAACGCGAAATGAACGTATTAGTAGCCTTAAAATAATGCCTGTCTTTATGAAAACGATCCGCATATTtgatttgttctttttgttgcGTCTGGTTGGTGCGTTTGATGCGCCGCGTGAAGTGCCGGTGATGGTGGGAGATTCTGTCACTCTGGACTCTAACGCTTCAGAAATAGAGCGGGCGAACGAGGTCGAGTGGAGATTTAATGACATTCGCATAGCTAACTTTATCAAGGGCGACGCCACCTATCACGAGAGATTTaaagacagactgaagctggacagAAACGGGTCCCTCACAATCAAAGACACCAGAATAACAGACACCGGAGTCTTTAAATGCACCGTTATCAGTACTAGGGAGAGAGTCGAGAGATTCCGTGTTACTATTTATGCTCCACTATCCATTCCTGTCGTCACCAGTGACACTTCACAgtgttcatcatcatcatcttcatcaacCTGTTCACTGCTGTGTTCGGTGGTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccagACATGTCTGCATTACCGACCTCTGTCGTTTGTGTTCAGTTCCCTCTTCAAATGAAGTCCATTATGGAGAAGGGACTGAAGCTGTGATCCGATTGGTCGTCACTGCTCTAGTGGGCGTGGCTGCTGTGGCTGCTTTCATTGTGCTGGTGTATGACATCAGATCCAGAAGAGTTGAAAAGGATGttctaaaacattaataaagccTTTTTACAGACTGTGGTGATGTGTCAGCATAACAAATATAGTTGTAtggttatatttttttatattttcattgatatatatatatatatatatatatatatatatatatatatatatatata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU222064 lncRNA downstream 2736 5273557 ~ 5276742 (-) True G150060
TU222031 lncRNA downstream 44018 5232171 ~ 5235460 (-) True G150033
TU222016 lncRNA downstream 52604 5218835 ~ 5226874 (-) True G150025
TU222005 lncRNA downstream 75471 5201322 ~ 5204007 (-) True G150017
TU221992 lncRNA downstream 98226 5177689 ~ 5181252 (-) True G150008
TU222076 lncRNA upstream 21937 5302860 ~ 5303238 (-) True G150071
XR_006247691.1 lncRNA upstream 27327 5308250 ~ 5309890 (-) True LOC122327610
TU222098 lncRNA upstream 137533 5418456 ~ 5425539 (-) False G150086
TU222105 lncRNA upstream 137533 5418456 ~ 5470508 (-) False G150086
TU222099 lncRNA upstream 147274 5428197 ~ 5428769 (-) False G150086
XM_043222918.1 mRNA downstream 95192 5182941 ~ 5184286 (-) False LOC122327503
XM_043222917.1 mRNA downstream 95192 5182941 ~ 5184286 (-) False LOC122327503
XM_043222916.1 mRNA downstream 95192 5182941 ~ 5184286 (-) True LOC122327503
XM_043222657.1 mRNA downstream 125622 5147883 ~ 5153856 (-) False LOC122327354
XM_043222659.1 mRNA downstream 125622 5147883 ~ 5153856 (-) False LOC122327354
XM_043222587.1 mRNA upstream 46363 5327286 ~ 5341934 (-) False LOC122327315
XM_043222585.1 mRNA upstream 46363 5327286 ~ 5341934 (-) False LOC122327315
XM_043222586.1 mRNA upstream 46363 5327286 ~ 5341934 (-) True LOC122327315
XM_043222576.1 mRNA upstream 55801 5336724 ~ 5350466 (-) True LOC122327308
XM_043222575.1 mRNA upstream 55801 5336724 ~ 5341953 (-) False LOC122327308
XR_006247637.1 other downstream 125622 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 542618 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 691056 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 793135 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 845978 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 246634 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 257633 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 257638 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 363490 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 578424 5859347 ~ 5861317 (-) False timm13

Expression Profile