RNA id: XM_043223410.1


Basic Information

Item Value
RNA id XM_043223410.1
length 6237
RNA type mRNA
GC content 0.42
exon number 11
gene id cilp2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10030870 ~ 10044212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTATCAGACTTGATTTTGAAGGACGGGGGAAAGAAATTAATTGGTCCAGCTGTGCAAAAACttgacaaactttttttttggtgtgtgtctttaatttatttagtgttaCCAACCCATCAGTGGCTGCGGCACTATGTGGGACTTCACAGTCGTGACGTTGGTGCTGTCTGCCGTCTTTGTTGTGTCTCTGGCACAAGGACCCATCTGGGACAACTCACATCTTCGGAGGTTAAACAAAACAGACAGGAACAGAAAGCTGGCTTACAACAGCCTTGTGGAGCCACAGACCACAGGTGTAACCGAGTGGACATCCTGGTTCAATATCGACCATCCGGGAGGAAACGGTGACTATGAGAGGTTAGAAGCCATACGCTTCTACTACAGAGAAAGGGTCTGCTCACGACCTGTAGCCATGGAGGCCCGTACCACGGACTGGGTTGCAGCTGCGGATACGGGGGAGGTTGTCCATTCCAGTCTGGAGAAAGGCTTCTGGTGTATCAATAAGGAGCAGCCATTTGGTCGCAGCTGTTCCAACTACCATGTGCGATTCCAGTGTCCACCAGTCCACTCGTACTGGACCGACTGGAGTGAATGGACGCCTTGCTCTGCCACCGCCTGTAATGATGTTGGCATCCAAGTCCGTCAGAGGAAATGCATGAGCACACAACCTCTTCCACTGCTTCTTTCACCTGTCTGCGTGGGACCTCACATTGAACGCAGAGAGTGTTCAACTCCTCCATGTCAAGCTTTGTGGAGCCAGTGGGGTTTATGGAGTACTTGCTCAGTGACCTGTGGAAAGGGCCGTAGAACAAGACGTAGGACATGTCACAGATCTTCTACTAAGATTCAGTGTACAGGACGACCTGTGGAGGTCCAAAAGTGTGGAAATCCATGTCCAGtggcATGCAAACGTGTCTGTCCTGGGGGACGTCCCAGCAAGGACTGTAGCTACTGTATCTGTGATGGGCCAACGCTGCACGGGGAGGTCTTTAGTGTTACAGGTGTTCCTGTGCCAAATGCCACAGTGGCTCTGGCTAGCCAAGCCAAGGTTGTCCGTGCCCACACTGATGCCAAGGGTCATTTCAAGATTGATGGACTGTGCACCAGTCCACAGACCCGAGTGGTCATAAGAAAGGATAAATTTTCACCTGTTACTCTTCCTGTTTTCAACAACAGTACTGATGAATTCTGGGTACGGGCCATCTTACAATCCTcagAAAAGCCCTATATTGAAAAGCACCCAGAAGACAAGGTGCGTTACGAGGGACAACGTGCAACCCTTTGCTGTAGAGCGACAGGATCACCAAAACCTGACAAATATTACTgGTACCACAATGGAACCTTACTGAATCGCACAATATACAAGTATGATGAAGATTTGATATTGCGGGACCTGAAACCAGAGCACTCAGGCAAATATCACTGCAAAGCAACTAGTCTGACAGGCAGCATAAAGTCTACTTCAGCCGTCCTCACTGTTTTCGctAAAGGAACACCAGCATGCAACTCAACACCTGAAACTCACCTGATTAAATTGCCATTAGACTGCAAGCAGCATGGAACAGACTCCAAGTTTTACAATGCAGGTCGTTGTCTACATAACAAATGCCCTGGATCGCTGGACTTTGACATGCGTTGCAGGGATGGATCTGGCTTCTGCTGTGGGGTCAAACAAATGGAAGCTAGAGAGATCAACTGTGGCCGTTACACACTGCCTATCAAGGTTGTTAGTGAGTGTGGCTGCCAGAATTGTGTGGAGCCCAAAATTCTTGTACGGGGCAGGGTGGTGTCAGCAGACAGTGATGAACCCCTGCGCTTTGGACATATTTACATAGGGAAAGAACGGATAGGTACCACAGGATATCAGGGTGGGTTTACAATCCAGGTATCTCCAGATACACAACGTCTTGTGGTAAACTTTGTGGATCCATCTGAGAAGTTCATTGACACAGTCAAGGTTTTTATCTTTGACAAGAGAGGAGGTTCTGTCTATCATGATGTAAAAGTGATGAGGAAGCAGGAACCTGTTGATATAAATGCTGCAGAAAGCAATACCATTTACCTGGGTGAAATCAAAGATGAGGACCCCATCGGTCAACTGGTCATACCTCCAAACTCTTTCCATAAAAACACAGGGGAAGTGTACGAAGGGACTGTTAAGGCCAGTGTCACGTTCCTTGACCCACGCAACATTACAAtggctgctgctgctcctgGCGATCTCAACTTTGTAGACAATGAAGGAGACATGCTACCTCTCAGGACATATGGAATGTTTTCAGTAGATTTCCGAGATGGAGCAAACCAGGAGGTTCTAGGAGCTGGCGCAGTCCAGGTACTTCTTGATACAGAGCATGTAAAAATGCAGGAGCACATCCCTGCTATGAAACTCTGGTCCCTCAATCCTGATACAGGTATTTGGGAGGAGGAGAGTAACTTTCAACCCACACAAACTACTGTTGCTGGCAAAGGAAGGAACAAACGTGAGGAGCGCACCTTCCTGATAGGGAATATGGAAATCAGGGAGCGTAGGTTGTTCAATCTCGATGTACCTGAGAATCGCCGGTGCTATGTCAAAGTGAGGGCGTACATGAGCGACAAGTTCCTTCCCAACGAGCAACTAGAGGGAGTGGTAATAAACTTGATAAACCTGGAGCCTAAGCCTGGCTACTCATCAAATCCAAGGGCTTGGGGACGCTTTGATAGTGTGATAACAGGACCAAACGGTGCTTGTCTTCCAGCTTTCTGTGATGCTCAGAGGCCTGATGCATACATGGCTTACGTCACAGCTATTATGGGAGGTGAGGAACTGGAAGCAGCCCCCTCAATGCCAAAGATGAACCCAAATATTATTGGTGTGTCTCAGCCGTACTTAGGGAAGTTAGATTACCAGCGCTCCGATCATGAGGATCCAGCACTTAAGAAAACAGCCTTCCGAATCAACCTAGCCAAACCAAACCCTAACAATTTTGATGAAACGAATGGACCAATCTATCCTTATCAGAGTTTAATTGCCTGTGAAAATGCACCTGTTGATGCCAACCACTTTCGCTTCTTCCGTGTCGAAAAagataaatatgaatacaatgtGGTACCTTTTGAGGAGAGTGACCTTACATCTTGGACAGGAGATTATCTTTCATGGTGGCCAAATCCACAAGAGTTCAGGGCTTGCTACATCAAAGTTAAGATTCATGGAGCTACAGAAATCATGGTAAGGTCAAGAAACCTGGGTGGCACTCATCCTCAGACAAGAGGTCAGTTGTATGGCATTAGAGACATTCGTAGTACCCGTGATTTGCACCATCCTAACACCTCTGCTGCTTGTCTTGAGTTCAAGTGCAGTGGGATGCTCTTTGACCAAGGTATTGTAGACAGGTCACTAATTTCTATTATCCCACAAGGTAACTGCCGTCGTGTAGGTATTAATGGTCTTCTGCAAGAGTACCTGATAAAGCATCCTCCTGTTCTTCAAAACAATGAGTCTCATGCATTCAATATGTTAGCTCCTGTTGATCCACTTGGACACAATTATGGAATATACACTGTCACCGACCAGAACCCACGGGTTGCCAAAGAGATTGCCATTGGCCGTTGCTTTGATGGAACTTCAGATGGTTTTTCCAGGGAGATGAAGTCAGATTCTGGAGTGGCACTGACGTTCAGCTGCCCTAAAAGGACTGTGAATCGTGAGAGCTTATTTCAGCGCCTGCAAACAAATCCTGGCCTAACACTAACACAGATGGCGCGGGAGATGAGGGAGTCCCAGGGACTGCAAGTCAGAAGAGGGTCAACCCAAATGGTGGCCTACCCTTTTGGCCAACAGGGCAGGAGCCAGAACCGCAGAGCCACAAACACTAACAGAAGAAGACCAGCTACAAGGACACAACCAAGACAGTAGATCTTTCTTTAGGTCTTTTGGGTTGAAGAGAGTGAAGAAAAAGAGACTCAAAAAACCTGCTATGGAAATCCCAAACTTGGCCAGCCGGGTGATATTGGATGCTCTGTCCTAACGGAGCAAAATCCTCACCTGATTTATCCGAACACATTTAAACTCTTTCTACTTGTGTATGGAAAACTGTCCTCTCATACTTCCTCAAAGTTTACTTCATTgtttaagacatttatttttagtgattagGCCCATACAGActgatgtcatttatttatttccaaagTCAAAACTTGCTTATGTGGAGCGTCCTACTTTTAGATCCGTAATTATTCGCTTATTTTTCTAATTGATCAGGGTCTTCCATTGGCGATAGGCTAAATAGGTAAGACAATTCTGTATAGATTGAGGTCAAGTGTGACAGCTGCTAAACCACATATTCTACTCTATTGGATGCAATGATCAAGAATTGAGGCAGCAAAGATGCCAGTTTTGTTTCGCCTCCTTTTCCACGTCGCCATTCAAGTTATGATTTGGCCAACTATTGGTCTGACCAAAGCATGACTGACCCCTGCCAAGAATAGCATCCCTTAACAGAATAGATCGCCAAGGTAGACTAAACAAACCTGTGGTGAGACAAAGAATAATATAATGGCCCtaacttcaaaaacaaattaatgtttaattttttatttaatgccctCTTCATACTTTTGACCATATGGCTGGCCTAATCAAAATTTCTTTTGATATGAAATCCAACTAATACAGTATCTCAGTGTATGATGTCTAGATCTTAGAGTTAACtgattgtattttgtttcttgtttctgtttgtttcataAGTGCAATATTATGTTCCAGTAATGACTTGAGAGTCCTGACAAAAACATCCTATGTTATGAGCCAATCAACCATAGGTCTGTTAAAATGTTGGGCTATTCCCTTAGTAATTGCATATCTGAATTTCAAATTAcacctgttcttttttttaattaatcctaataaattagattttactaATCCAATTCAACCTCCTCTCATATAGCCAGCTGACAATGCAACATGAATGCAGTTGCAGTATTTAACTCCACCCTAAAGTAACAAAAATTCAATtgtgtgatttaaaaacaatcaatgcaccattaaaaaaataaaccatgtgGACCCGCATAAGCTGGACATTTATATCCTTTGAGGTATATTTTGTAGGTAGCATtgcaaatagaaaaaagtaTTTGCCTAATCCCTTATGCTCACAATATTCTGCATTGGCTCAAAgcaaaaagttaattaaattgAGTGCATGCTTTTATAGATATGGTTGCAAAAGTTTGTTTTGGCTTTTATTCAAAGGTGTACAGCTGGACCAATGCAGgtgaaatatatacaaaacttaatattttaaaatcaaatcatcaaatttaaataatattctaaaatcaAATCATCAAATTTTTActcagtttaaaaaacaaattatcaactgaataaagtctttaaagtctttaaaaaaatccagtaaagtaatattattgtacattttttctaaaattgcAGTTGAAGACAAAGTTGCAGAGTCTTATAACAGACTATTTGTAATCATTATAatctgagatttaaaaaaaaaaattgctatatttaaaaaaaaaatgtcaaaatgtgacatttacagGACAATTTTTACAGTCATGGCCGAccagaaaaatatgtaatcataaggaaatataatgtaatgaaacacattttgtaaactgtaaaacgCATCGCTTCAGGCCAAGTGCAAACGTAAAATTACTGAACACCATTATTTTCTATCCCAGACAATTTCATCTGTATGTGATGTTGAGTAGTACATATGTAACTTGAATAAATTTAAACTTctgtaattttgtaatatatcCAATTAAAGTAATCTTTGGtcttttagcatttatatactgtacatttttgtttcagaggATAGATGTAGTGGGATATTGGATGAATATggtgctaaaaaaaattgttggcttttaaaagtgtttgtcCTCGCTTCAACTGTCTGGCTGGTCTCAGGGAGACTACAACTTTTCCAGGAATAACCTCTGGCAAAATGTGCATTGATACCTCTACCACTACACTACAAAGTGAGAGTTGAATAATTGTCTTTGCACTCTCAGAAATCTCTTTTCATGCTTGCTTAGCAAACATTTTACATACAACACATCTTAAAAATCATATTGTAACTTATACTGCATGAAATTTCCCGTCTTGCGATCTCAAAAGCCAGTTTTATGTGTAAATTGTGGATTACAATGTCTGTCAAATTTACCAGAATGTAAATAAAGATCTCTTGTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247776.1 lncRNA upstream 67450 9923614 ~ 9963420 (+) False LOC122328159
TU223958 lncRNA upstream 134031 9896581 ~ 9896839 (+) True G151334
TU223956 lncRNA upstream 134570 9895441 ~ 9896300 (+) False mef2b
TU223957 lncRNA upstream 135543 9895046 ~ 9895327 (+) True G151333
TU223951 lncRNA upstream 137381 9888200 ~ 9893489 (+) True borcs8
TU223964 lncRNA downstream 9706 10053918 ~ 10079639 (+) False G151337
TU223965 lncRNA downstream 30624 10074836 ~ 10079639 (+) False G151337
TU223961 lncRNA downstream 30766 10074978 ~ 10080145 (+) True G151337
TU223999 lncRNA downstream 37570 10081782 ~ 10082620 (+) True G151358
XR_006247731.1 lncRNA downstream 93088 10137300 ~ 10140154 (+) True LOC122327864
XM_043222234.1 mRNA upstream 2396 9996479 ~ 10028474 (+) True yjefn3
XM_043223380.1 mRNA upstream 37429 9970622 ~ 9993441 (+) True gatad2ab
XM_043223381.1 mRNA upstream 37429 9972170 ~ 9993441 (+) False gatad2ab
XM_043223145.1 mRNA upstream 120077 9895771 ~ 9910793 (+) False mef2b
XM_043223411.1 mRNA downstream 26604 10070816 ~ 10072852 (+) True si:ch211-212d10.1
XM_043223124.1 mRNA downstream 145002 10189214 ~ 10208785 (+) True cbarpb
XM_043223395.1 mRNA downstream 179378 10223590 ~ 10231309 (+) True fstl3
XM_043223041.1 mRNA downstream 194865 10239077 ~ 10249861 (+) False bsg
XM_043223040.1 mRNA downstream 194866 10239078 ~ 10249861 (+) True bsg
XR_006247720.1 other upstream 37429 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 67236 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 67236 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 67236 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 137381 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 664832 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 761840 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 771923 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 874848 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 1274477 11318689 ~ 11323940 (+) False mier2

Expression Profile