RNA id: XM_043224590.1


Basic Information

Item Value
RNA id XM_043224590.1
length 1681
RNA type mRNA
GC content 0.42
exon number 2
gene id apobec2b
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11527406 ~ 11529661 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATATCCTGATCTAAAGGGGAAGGAAATACCTGATGAATGTGGGTTATATGCCATTAAGTATCAGTGCTCATTACACATTTGAAATCGAGGAAGAGGAAAACAGCTACTTGATGCACCTGTTGGACAAAATGGGTTGTGACGCGTTTAAACAATGAACGTATAAAATTCCAGCCCCCTATTatattttagcctttttttagAATGGAAACAAGAGAGCAGCTGCCCTTCagtctccccctctctctgacCAGCTCCTGTTTGTCAGAGAGTTATCTTTATCTTCATCTTTAACTCTCAGACTTAGGAACATATTCAGGCTGTCATCTCTCTGACTCACATGCTAAATCAACAGCACCCTTCACAGGCTCACAGCTAGCAGACTCATTTCAGCCATGGCGGACAGAAAGGACAGCAAGATCCCCGGTAAAGGCAACctgatgaagaagaaagaaaagaaagtggaGAAAGCCGAGAGCAAACCtgaaaaggagaaagaaaaaaacaaagataaaggCGAAAAGGAGACAAAGAAGCCAGAGAAGACCcaagaaaatcagcaaaaaaatgAGGAGACGCCTCAAGGAAATGGGGAGGTGGCAGAAGGAGCCAAAGGCCCTGTCAAAGATGAGGAGTTTGAGCTGGAGCCTATGGAGCTGCCTCCATTTGAGATCATTGTAGGAGACAGAATGAACCCGACCTTCTTTAAGttccaatttaaaaatgtggaaTATTCCTCCGGACGCAACAAGACCTTCCTGTGCTACCAGGTAGACATTCAAGGAGGCGCTGGGGAGACAGAAGGCCTTCGCGGCTACCTGGAAGATGAGCACTCGGGTTCACACGCTGAAGAGGCCTTCTTTCAACAGGTGCTGGCCTATTATGACAAGTCACTCCACTACACAGTGACCTGGTACATGTCCTCGAGCCCGTGCGCAGCCTGCGCTGCTAAGCTCGTAGAGATCCTGCGAGCACGCAAGGCAATGCGCCTTAATATCCACTGCTCCCGTCTCTTCCAGTGGGAGGAAGCAGAGATACAGGCCGGACTTCAGGCACTAGTTGGGGCGGGGTGTAAAATACGCATGATGAGGCCGGTGGATTTTGCGTATGTTTGGTCTACGTTCGTTGAGAATGAGGAAGATAACTTTACACCCTGGGAGGACTGTCAAGATAACTACGATTATTATGATGAGAAATTGTGTGATATTTTAAAGTAGGGTAAGGAGCCGCTGCTGGCTTCTGATTAAGACTGTTAAAAACAACCTGAGCACCGCCTTTAAGCGgattttgtaattaaaagctAATTATAACAATGTCCCTGTAATGACAACAGCATTGTTTTGTCTGTCAACACTATTCATCCTGTTAAATCACTTTGTTGACTTTACCGAATTTAAAGTCATGAATTCaaaccacaaaaatatataagtaatactaaatattattttaagaaaaagttaaaatatttgggTGAAAAATTCAAGTATAAAATTCCAGTTAACTCTAAGCAAATTATTTTGCTAAGTAAAATATAGTTTGACCTAAGCATCATACTTATttcgttttttaattttattttttaattattattaaattatatgatgAGTTTTGGCATCGCGGACAGTGTCCctgtatataaaacaataaacatgagTCAATTTCCTACCATGAGCACAATCTAAA

Function

GO: NA

KEGG:

id description
K18772 APOBEC2; C->U-editing enzyme APOBEC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231969 lncRNA upstream 194479 11331742 ~ 11332927 (+) True G156633
TU231915 lncRNA upstream 213803 11219035 ~ 11313603 (+) True G156592
TU231931 lncRNA upstream 215919 11245551 ~ 11311487 (+) True G156599
TU231912 lncRNA upstream 284370 11211041 ~ 11243036 (+) True G156590
TU231883 lncRNA upstream 375359 11148863 ~ 11152047 (+) True G156568
TU232036 lncRNA downstream 2974 11532635 ~ 11533198 (+) True G156681
TU232037 lncRNA downstream 4929 11534590 ~ 11534917 (+) True G156682
TU232039 lncRNA downstream 9954 11539615 ~ 11540315 (+) True G156684
TU232041 lncRNA downstream 10979 11540640 ~ 11555919 (+) True G156685
TU232052 lncRNA downstream 84469 11614130 ~ 11651107 (+) True G156690
XM_043224589.1 mRNA upstream 2538 11520750 ~ 11524868 (+) True si:dkey-109j17.5
XM_043224592.1 mRNA upstream 6801 11518832 ~ 11520605 (+) True ccdc115
XM_043224056.1 mRNA upstream 16445 11507968 ~ 11510961 (+) True fkbpl
XM_043224671.1 mRNA upstream 82662 11441897 ~ 11444744 (+) False LOC122328759
XM_043224284.1 mRNA downstream 104615 11634276 ~ 11638023 (+) True LOC122328536
XM_043224285.1 mRNA downstream 104615 11634276 ~ 11638023 (+) False LOC122328536
XM_043224116.1 mRNA downstream 156051 11685712 ~ 11693491 (+) True atp6ap1lb
XM_043225498.1 mRNA downstream 166155 11695816 ~ 11704390 (+) True slmapb
XM_043225499.1 mRNA downstream 166155 11695816 ~ 11704390 (+) False slmapb
unassigned_transcript_2622 other upstream 8870 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 11535 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 13560 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 14708 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 350373 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 2524703 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 2527024 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2770040 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 3154329 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 3182486 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile