RNA id: XM_043225351.1


Basic Information

Item Value
RNA id XM_043225351.1
length 2631
RNA type mRNA
GC content 0.45
exon number 13
gene id arhgef3l
representative True

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12175329 ~ 12182648 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGGAAGAGGGGAGGGCTGGGAGAGAGTGCACAttatcttttttgtcttttctttgaaaagctGGAACAGGTGCTTCTAAGATTTATGGTCAGATTTTGTGTGTAATAGTCTTCTAATTACTGCCGTTtcttttcataaacatttttggaGATGCTATgagaaaggaaaagatggaACTTGAAGAGACGGAGGCTGATATATCACCTTCCTGGTCTCCTGTATCTAGAGACAGGCTCCTCACGTGCGCCAACCTGTCAGATTTTGCAGGGaaaaaaagaaaacaagaccCAAGTAGCGATGCTGAGCTTTCAGCCCGAATCTTGGAGGACTGTGAAGACGATGACTTTCCCATCAGTGACCACATACAAGATTCAGAGGGTCCATGTAACAAAAGAGTCAAGCCGGTAGATAAAAGTGCTTCGGTCACTGGTATCATAACGCCGGTGAAGACCCCAGCTTTGAAACGCTTGGGCCAGTCTATACAGCGTTCTATCAGTTTCCGGACAGAGGCCCGGCCGTTGCCCCCAATGCCAATAAGAACACGTCAGAAGGCCTCTTCATTTCCACGCCGGCGGAGCAGCCAGCTGTGGAGCGATACAGTCGACAGCATGAGCCACGAGCTCAGTACCAAAGAGATCAAACGACAAGAGGTAATCTATGAGTTAACCCAGGGCGAGAAACAGCTCATTGAGGATCTAAGTCTAGTTAAAAAGGTGTACTATGAGCCAATGCTGAAATTGGACATCATGACAGAAAGTGAGCTGGGACAGATTTTTGGCACCCTTGATTCTTTAATACCCCTTCATGAAGATCTTTTAGCTCGTCTTGAAGGTCTTCGTGGAGCAGAGAAGACTGTGCAAGAAGTCGGCCCCACTATGATGGACTGGTTTCCATGTCTGGAGGCATACATCACATACTGCTGTAACCAGGTTGGAGCAAAAGCTCTGCTCGATCAAAAGAAGCAGGACAGACGGGTCGAGCATTTCCTGCGGCTGTGCCAGGAGTCGTCCTTCAGCAGAAAGCTAGACTTGTGGAATTTTCTAGACTTGCCTCGCAGCAGGCTGGTGAAATACCCTCTGCTGCTGAAGGAGATTCAGAAGAGCACTCCACCTGAGCATCCAGATGAGGAAGCACTGCCACATGCGATGGAACTAATCCAAAGGATTATAACAGAAGTCAATCTTAAAACTGGAGAGGCTGAGTGTCAGTTTTACAGACGGGGTCTGTGCTACTCAGAAGACAGTCAGAGGGTTCCAGAAATCCAGGCATCTCGTTTTTTATACTGCCACGGTGAACTGAAGAGCACTAAAGGACAGAAGCTGCACGTGTTCCTGTTTGAGCTGGTATTGGTTTTGACCCGACCAATGGCACAGGATAGGGAAGGACCAGTCCAATTCCAGGTGTACCGTCAGCCCCTCCCAGCTGCTCACCTCCATCTGGAGGACCTGCCTGATGGGGAACCAAGCAGCTCTGGATCCTTTCGTGGGGCTTTTACGGGCAATGACAAAGTGAAGAACTGCTTTCGTGTGAGTGCCACAGGGCGTTCTAAGTCTCAATCCCACAGCCTGCAGGCTAATGACTCCTTCAATAAGCAGCAATGGATTTCATGTCTGCGCCAAGCAATGGTCCAGTCACGAGACAGACAGGCTCAAAGCAGCCACTGCAAACCCTCTGAGCGTTTAAGCCCTGACCCTGCGCTCTATAACAACATCGCTGAACTCAACCTTAACTCTGATGTGGAGATGCCAGACACATAGACCACGTCCACCGGTGCTTTCCCGTTCAAAGGTTCATTCACGAACACAGAACTTCACCGTTACTGTGACAGCTGACTTTCTCAGGACGAATGAGATCACACAGTTGCTGTCTTACACCCTTTCTAGAAACTGTGAGAATAACGTCATGTAGCTATATTTGTATACTCCACATGTGGATGGTTGTTGCTGTCAGATGTCTCAGATGGAGAATATTTCATTAGGCTTAtgctttttgcttgttttttcattcataGAGAATGCTGTGtcttatttgttaaatatatgttaGGCTATAGGTCATAAGAACCATCtcttcatcattttttttacaactttttattGCACACCATTTCTATCTCAcgtaattaataaacaataacatttgtGCAATCTGAATGGCACCTAATCTTAGATGAAGCCAGGATTTTTGTCATTGCATTTTGGTAGCATCAGTTTCAAGTCTTTCATTAATATAACCTGAATATGAGAGCCTAAATGCTTATTTTCTGATAGAAATCAGTGGGTTTCAAAAATCATTCCGACAAGTCAGGCGAACAGCTTCTTTCTAACACTCTCCTCAAGTGTGTAAGtttggagagtgtgtgtgaaattcTGTCTAAAAAGTCAGATTGCTTTACTGCAGCAATAAATGCAAGTGTACATCAATCCACTGTTATTGTGACAGTCATATATTTACGAGAGTAAAttccattcatttaattatagggggccctagaaaaaaaaaatctatatacgGGTGCATTATAGGAATTCTGTGGCACTTCTATGCCAGGAGGTATTCGTTccctttttcatttcagtgcatAATTGTTTCCGTTTTGTTTTCAATAAACTGACAACTTCCATAAAA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232394 lncRNA upstream 414 12174530 ~ 12174915 (+) True G156933
XR_006247800.1 lncRNA upstream 137441 12030146 ~ 12037888 (+) True LOC122328486
XR_006247799.1 lncRNA upstream 140372 12030146 ~ 12034957 (+) False LOC122328486
TU232372 lncRNA upstream 142489 12030189 ~ 12032840 (+) False LOC122328486
TU232326 lncRNA upstream 202407 11946684 ~ 11972922 (+) True G156881
TU232392 lncRNA downstream 21608 12204256 ~ 12205395 (+) True G156931
TU232390 lncRNA downstream 21696 12204344 ~ 12205395 (+) False G156931
TU232612 lncRNA downstream 57201 12239849 ~ 12241401 (+) True G157079
TU232614 lncRNA downstream 63226 12245874 ~ 12246101 (+) True G157081
TU232604 lncRNA downstream 63569 12246217 ~ 12251978 (+) False LOC122328708
XM_043224690.1 mRNA upstream 943 12157497 ~ 12174386 (+) False uba1
XM_043224689.1 mRNA upstream 943 12157548 ~ 12174386 (+) False uba1
XM_043224688.1 mRNA upstream 943 12160045 ~ 12174386 (+) True uba1
XM_043225440.1 mRNA upstream 19029 12113746 ~ 12156300 (+) False camkvl
XM_043225441.1 mRNA upstream 19029 12120615 ~ 12156300 (+) True camkvl
XM_043225352.1 mRNA downstream 449 12183097 ~ 12187125 (+) True usp21
XM_043225168.1 mRNA downstream 5846 12188494 ~ 12204119 (+) False ccdc30
XM_043225166.1 mRNA downstream 5873 12188521 ~ 12204119 (+) True ccdc30
XM_043225169.1 mRNA downstream 5873 12188521 ~ 12204119 (+) False ccdc30
XM_043225167.1 mRNA downstream 5873 12188521 ~ 12204119 (+) False ccdc30
unassigned_transcript_2622 other upstream 656793 11518465 ~ 11518536 (+) True trnae-uuc_33
unassigned_transcript_2620 other upstream 659458 11515799 ~ 11515871 (+) True trnaf-gaa_120
unassigned_transcript_2619 other upstream 661483 11513773 ~ 11513846 (+) True trnan-guu_36
unassigned_transcript_2618 other upstream 662631 11512625 ~ 11512698 (+) True trnan-guu_35
TU231904 other upstream 998296 11174421 ~ 11177033 (+) True G156586
XR_006247901.1 other downstream 1871716 14054364 ~ 14054500 (+) True LOC122329331
XR_006247900.1 other downstream 1874037 14056685 ~ 14056821 (+) True LOC122329330
XR_006247782.1 other downstream 2117053 14299701 ~ 14343274 (+) False si:dkey-151g10.3
TU233368 other downstream 2501342 14683990 ~ 14685316 (+) False LOC122328906
TU233419 other downstream 2529499 14712147 ~ 14714533 (+) True LOC122328914

Expression Profile