RNA id: XR_006248066.1


Basic Information

Item Value
RNA id XR_006248066.1
length 1243
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC122330703
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 847287 ~ 849709 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGtgattgtttattatttcactTATACTTTTAGTTTTGGGTATTTTAGGCTTATGACCTTTCAGAGTTGTGTATCTTTTGACTGGTAAAAAGCGACTAGAACAAACGTCatcaaaagagagagaggcgtCACTCGTCCTCTGACTCAACCCTGTTTCGTTTTCAGACTGAGAAGtctgaaatattataatattatattataaaaagtttatattataaaagtCTAATCCTATtaacgagtgtgtgtgtgagagtagtTCTACAGTCAtctaatgtaaaagtaaaagtgaaaGTATCAGgcttttttgatttaaaacaaagtgCATTTTTGAGTGCATATTATCCCCTAAACTCGtcaaaaattgaataaataaaaatgatgaaaccGTTAACGTGGTTTAATATACGAAGATTGCAAACGCAACACAAAACATGTTATGATACTGTATATTAGAGCTGTACCCTATATAAATATGCTGACTCACTGGAAAATACACTGAGGTTGTTGGGAATTCTGGCTGAAATCTACTGATAAACACGAGAATCATTCGAACTGATGAATATTGTAGAACTCTGCTGCTTTGCACTCCCACACAGGTTTTTCGTGATATATTTGATGTGTCTCGTCTTCAGAGATGTCCGAGAGCAGTTTAGGAAAGAAGGACAGGAAAAGCGCTGCGTCAAAAATGACAagaagtgacagcaaagacaatGTTGTCAACTTTTTGAGCCcgagccaatcagagctcagTGTTCAAGGAGATCTTGTGGCCAGCGACGTGATCTTCATGAGAGGAACGATCAGATCAGATCTGAGAGAAGTGCCACAGAAACACGCCTGAATGCTCCGTCAGATCCGACTCAAACCACACCAGGACTTTATCACACTGAACCAATCAGGGGCGACATTTCAGTTTCACAGATTCGTGAGTcatgatttttgtgttaaagCCTGTCGACTAGAATTGCGTTCTGATGTAAATGAGAAGTTTAGTTTGTTTCATAATAGAAAGAGTGCTGTGGTGTTTCTGACGAATGacgttctgtttgtttttactacTTTTCACTTGAAACAGCTTCCTGTGAGCTGAAAGATTCATTTATCTATGAACCATTCCTCAATAGTCTGCTGTATTTGATTGTATTCATATATCATTTGTTTCATGTATGTTCTTAATTGTTGGTCCTTTTTGTTGCACTGTTGaatgggaaaataaaataaagcatttccaACACAAGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23185 lncRNA upstream 9629 832259 ~ 837762 (+) True G15601
XR_006248050.1 lncRNA upstream 32316 808309 ~ 815075 (+) False LOC122330666
TU23193 lncRNA downstream 717 850016 ~ 852679 (+) True G15607
TU23011 lncRNA downstream 25948 875247 ~ 878298 (+) False LOC122330733
XR_006248076.1 lncRNA downstream 26372 875671 ~ 890906 (+) True LOC122330733
XR_006248077.1 lncRNA downstream 26372 875671 ~ 890906 (+) False LOC122330733
XR_006248078.1 lncRNA downstream 26372 875671 ~ 890906 (+) False LOC122330733
XM_043226920.1 mRNA upstream 946 844603 ~ 846445 (+) True LOC122330100
XM_043229640.1 mRNA upstream 54723 783410 ~ 792668 (+) True LOC122332312
XM_043227493.1 mRNA upstream 71857 754430 ~ 775534 (+) True LOC122330463
XM_043227501.1 mRNA upstream 71857 754430 ~ 775534 (+) False LOC122330463
XM_043227358.1 mRNA upstream 93678 743953 ~ 753713 (+) True LOC122330397
XM_043226983.1 mRNA downstream 156684 1005983 ~ 1009431 (+) True LOC122330135
XM_043227127.1 mRNA downstream 162012 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 168408 1017707 ~ 1019352 (+) True LOC122332569
XM_043229957.1 mRNA downstream 185953 1035252 ~ 1045858 (+) True LOC122332610
XM_043226875.1 mRNA downstream 197713 1047012 ~ 1051151 (+) True LOC122330066
XR_006248020.1 other upstream 78419 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 211782 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 290310 553698 ~ 557081 (+) True G15563
TU22959 other upstream 548070 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 771757 73544 ~ 75634 (+) True LOC122331567
TU23504 other downstream 156696 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 198704 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 441670 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 541440 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 546548 1395847 ~ 1402168 (+) False LOC122330032

Expression Profile