RNA id: TU23489


Basic Information

Item Value
RNA id TU23489
length 516
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G15806
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 959579 ~ 960094 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATCCTACTACATATCACGGATGCGGTAGAGAATTCCAATGAATGTATTCCGATGAACGCACTGACTGAACAGACGCGATTCTTAAAGAGCCAGTACACAATTTTAACACACTACATAACATGTAACATTTGCAGAATGTTTTATCCAAATGGCATATGTAAgttcataaattaataatgcaagTTGCAACCAATATAACAAAGGCAACAAAATATGCTCCTACATTACCACCCCCTAATGGTTCTCAAACTCTTTGAaactattaaatttaaaaatgagacttattattttaattgttggtCCAAAGCAACACCAATTCAGCTTCCTAAATATGTATTGCCTTCACTATAATTATTCTGCCTCCTGCAACAGTCAAGTTTTGTTATAGGTCTTTccaaaatgttagtttttgaCTTAATACGGGCTTGTTTCAATGACTCTTGCTAACATCCATTAATTCCTAGGGTCACTAGGGTACTAGAACAATGTCACCAAAAGGAAAAGTTATTTCACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23486 lncRNA upstream 3775 955507 ~ 955804 (+) True G15803
TU23172 lncRNA upstream 65914 817489 ~ 893665 (+) True G15592
XR_006248076.1 lncRNA upstream 68673 875671 ~ 890906 (+) True LOC122330733
XR_006248077.1 lncRNA upstream 68673 875671 ~ 890906 (+) False LOC122330733
XR_006248078.1 lncRNA upstream 68673 875671 ~ 890906 (+) False LOC122330733
TU23542 lncRNA downstream 109595 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA downstream 109595 1069689 ~ 1070138 (+) False G15833
TU23616 lncRNA downstream 155301 1115395 ~ 1115671 (+) True G15882
TU23617 lncRNA downstream 157129 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 160546 1120640 ~ 1133792 (+) True G15886
XM_043226920.1 mRNA upstream 113134 844603 ~ 846445 (+) True LOC122330100
XM_043229640.1 mRNA upstream 166911 783410 ~ 792668 (+) True LOC122332312
XM_043227493.1 mRNA upstream 184045 754430 ~ 775534 (+) True LOC122330463
XM_043227501.1 mRNA upstream 184045 754430 ~ 775534 (+) False LOC122330463
XM_043227358.1 mRNA upstream 205866 743953 ~ 753713 (+) True LOC122330397
XM_043226983.1 mRNA downstream 45889 1005983 ~ 1009431 (+) True LOC122330135
XM_043227127.1 mRNA downstream 51217 1011311 ~ 1013643 (+) True LOC122330251
XM_043229905.1 mRNA downstream 57613 1017707 ~ 1019352 (+) True LOC122332569
XM_043229957.1 mRNA downstream 75158 1035252 ~ 1045858 (+) True LOC122332610
XM_043226875.1 mRNA downstream 86918 1047012 ~ 1051151 (+) True LOC122330066
XR_006248020.1 other upstream 190607 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 323970 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 402498 553698 ~ 557081 (+) True G15563
TU22959 other upstream 660258 297895 ~ 299321 (+) False LOC122330774
TU22968 other upstream 883945 73544 ~ 75634 (+) True LOC122331567
TU23504 other downstream 45901 1005995 ~ 1009303 (+) False LOC122330135
TU23529 other downstream 87909 1048003 ~ 1049260 (+) False LOC122330066
TU23688 other downstream 330875 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 430645 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 435753 1395847 ~ 1402168 (+) False LOC122330032

Expression Profile