RNA id: XM_043235261.1


Basic Information

Item Value
RNA id XM_043235261.1
length 3904
RNA type mRNA
GC content 0.43
exon number 12
gene id rbfox1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9993833 ~ 10210616 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGAGTCAGGTGCAAGCTCCACATTTAGGAGAGGGTGGCGCTTTCGGTCTCCTTTTCATCATTTTTGATCTCAGTTTAcctgtgtattattttttttttccgcatcctttttttaattcgCTCGAATCTCTCAGAGCTGAGATcgcagtatttttttattttttttcggAGGAAGTTGCAAGCTTATTTTTTCGGTCAGTTGTCTTCTTACCTTCCCTCAGGACAGAAGATGAGTCTTTTGATTTCCCACTGATGTCTTTCCCTGCGCATCAGCTTCCGGACGACAGCGTTTGAGGATCTGAGCAGCATTTTGTTAGAGGGAAAAGTCCTTTTTGTGGGGGGGAGATCTGTTTCGGATCGTCCTATCAGCTGTGCGTTAACGTACACGTACCTTTCTTGTGGAGCCTGTACGAGAGAAACCTACACCATcaccctcctctctctctctctctctctctctctctctctttctctctctctctctggcacTTTGAGTGCACAGTTGTACTGGACTTCCTTGGTGCACGGATCTTCTCATTAAATAGATACGTCAGGAATTGGCGTCTAAGCAGGGGTTGTCAGTGAAAGGGTGAGGAGGACCAAGTGgggaaaggcaaaaaaaaagaagaagaagagcaagAACAAGACTGCTAGAAGCATCTCAAACCTTGTGAAGTAGCTTCTTCTTCCTCCAAGTGTCAGTTTTAATAAGCTCTATTATAgtgatataataaattatacaaaagaACTGTGAGCCTGAGAGAGTGGAAACAAGAAGGATTCAGCCGGGTTTCCGTAGCCGATCTCGAGAAGTTAAAAGAAGCTAAGTAAGGAAGCGTTTCCTCACTGCCGGAGAGCCCCTGACTCCTCGCTCAAGATGATGATGTATTTGTGGGGTAATCAAGACGCCCCAGCACCCCCAGAAACCATGGCCCAGCCTTACCCATCGGCCCAGTTCGCTCCCCCTCAGAACGGCATTCCTGCTGAGTACACGCCGTCCCACCCTCACCCGACTCCAGACTACCCGGGCCAGACCCCCGTGGCAGAGCACACGCTGAACATGTACCCCCCTGCCCAGACGCACAGTGAGCCCAGCGGACCAGACAACAGCGTACAGGCGGTCTCCGGCACAGCCACACAGACAGACGATTCAGCACAGACAGACAGCCAACAGCAAACACAGTcatctgaaaacacagaaaacaaaacgcAGCCCAAGAGGCTCCACGTCTCCAACATCCCCTTCAGGTTCAGAGATCCAGACCTCAGGCAAATGTTTGGCCAATTTGGTAAAATCTTAGATGttgaaatcatatttaatgaACGAGGATCAAAGGGTTTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCCAGAGAGAAATTACACGGCACGGTGGTAGAAGGTCGTAAAATAGAGGTTAACAATGCAACAGCACGGGTAATGACGAATAAAAAGACTGTCAACCCATATGCAAACGGCTGGAAGTTGAATCCAGTCGTGGGTGCAGTCTACAGCCCAGAATTCTATGCAGTGCCAGGCTTCCCATACCCAGCAGCCACGGCGGCGGCCGCGTACAGAGGGGCACACTTAAGAGGAAGAGGGCGCACCGTCTACAATACGTTCCGGGCAGCTGCGCCTCCCCCACACATCCCAGCCTATGGGGGTGTTGTTTACCAGGACGGATTTTATGGTGCAGATATTTATGGTGGTTACGCTGCCTACCGATACACTCAGCCTGCTACTGCTACCGCCGCTGCCTACAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACAACCACGCACTTGCTCCAGCAGCCACATACAGCGTTGGTGCCATGAATGCTTTCGCTCCCTTGACTGATGCCAAGACCAGAAGCCACGCCGATGATGTGGGTCTCGTTCTTTCTTCTTTGCAGGCTAGTATATACCGAGGTGGATACAGTCGTTTCGCGccatactaaaaaaaaaaaaaaaaaaaaacctttcaaaacCTATTGAGAATCTTCCTGTGGGGGTAACGGAGGAGTAATTCAGAGGCCTGGGTATTGCAATACATGCAGTAGTGCATCATTTTAGCATCTCTTAAGAGAGAGAAGACAAAAACGGATATTTTTCATCTTATACCTCAGATATTTTGTgctgtgtattttaatattgtgggtttttaatttctaaagaTTACATAGATTGTTGGCTGTAGAGGTTTCTGTGGTGATCTAGAGAGCTGctagattttaaaaagatgaaaaaaaaataataagatacAAATTGTTAGGGCTTTATCATGTAAATGAGTTATGTATGATAAATATTCAAGTCACTTCGGGGTTATCATATTTTGTAAGAGTGTAAGTGACTAGAGTCGTCCAGTGGTTTCTGCTTCCGTTTGACATCGCCTTTCGTCTTTCTTTTGGTTTCTTTTGTTTCTGGGTTCTGTGCCGAAAGAGGAAGAGTACGCAGGGGGTTGTGGGTAGGAGTAGATACAGGCGTGGTGGGCGAGAGACCGGGGGCTGTCCCCCGAGTGCAGCGAAGACACAGAGCCGGTCAAAGAGACCACTGAGGTATCGATTATTTAAGCTGTCTTATATCAGTCATTACTCAAAGCCAAAGGTTATGTTCCTGGGGTGTTCAATGTGTATATTCCGACTATACATAGCAGCTCGTAGAAACTCCCCAAAAATTCACCATgacagtattttactgtttaaCTATTATCTAGTCCTTAAGTCAGACCCTCGCTAGTTTAGGCCTACCACGAgatgttctttttatattacagtactTCCAGTACGTCGATTGATATAAATGCTGACTTTTATAACACGGGAGAGACGaaacacgaaaaaaaaaaaaaaaaaaacggcgaCAGTAGCGCCggttatattttttgtttttctttttcttttttttcttttttgttttggtttatttgggttttttttttctctcagaagtTAAGAAACTCTGATTATTTGTACAAGACGAgagtggggaaaaaataaactaacaGTGTATTAAATTTGATCTGTGCAGTGAAAATGTTCTCTTATACGAAAAACACAACTGTATAATGTTTTAGATTTAGTGTGGTAGACCAACTGTTAGAGAAAGGTGTCTCATTTTTTATGGAATCATACACAGATTTATATCAACACTTTACAAGTAATGCAATCATTATGTAGATATAATCATAGTATTTTTGTCAACTGTACaattttgcacacacacaacctgCAATTTTTTCatcactactactactacttcttCTCACTTGTGGGACGTTtcgttttgtctgttttcttttggtTCTCTGCTTCTTTCTTTCGAGTGTTTCGTTTtgatatcatttttaatgtgacaTCCTTTGTACTATTATTTTCTAGAACACAGCCTTTACACTTTGAAACTGTTTGATTATCGAGAAACTGAGAAATATATGACTTGTGAAAAAGATATCTATATGTAAATAGGAATAATGATAACTATGTCATTTACAAGTGCTACACAAACAAGCTGTCGAGGTGTTCTTGAAGAGTCGCAGCTTGGCTGTGCATACGCGAAGACTTCCCTTCATGTTGTTTACAAGTATACCTAATTAGAGGTGTTTGTCACATatctcatttttctttattttgtatttataaaagtttcaattgcataaaaatacaaacaaaagagCAGCTCCAGTTTATCCGGCTGCAAATATCCTCTTGTGTACTGTGTGCGTCACATCACACAACTTGGCAAAAATATCTTACCCACTGCTGTGATTCTGCTCTTTCTGCTTTAAGTACGTGTTGTGGACAGGCTTTCTCCTTGTCATTGTATGTGCATGCACTATGATCTGCATAACAATAACCATCAATAAAGTTTCTCAAGATAA

Function

GO:

id name namespace
GO:0021854 hypothalamus development biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14946 RBFOX, FOX; RNA binding protein fox-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27812 lncRNA downstream 85221 9901531 ~ 9908617 (-) True G18638
TU27806 lncRNA downstream 200653 9789616 ~ 9793185 (-) True G18634
TU27798 lncRNA downstream 207714 9785249 ~ 9786124 (-) False G18628
TU27935 lncRNA upstream 268211 10401833 ~ 10402211 (-) True G18717
TU27965 lncRNA upstream 440545 10574167 ~ 10579140 (-) True G18745
TU27991 lncRNA upstream 543835 10677457 ~ 10678580 (-) True G18771
TU28025 lncRNA upstream 555542 10689164 ~ 10697539 (-) True G18795
XR_006248708.1 lncRNA upstream 555797 10689419 ~ 10695504 (-) True LOC122334019
XM_043235244.1 mRNA downstream 19277 9964451 ~ 9974561 (-) False mettl22
XM_043235246.1 mRNA downstream 19284 9964451 ~ 9974554 (-) False mettl22
XM_043235245.1 mRNA downstream 19295 9964451 ~ 9974543 (-) False mettl22
XM_043235243.1 mRNA downstream 19539 9964451 ~ 9974299 (-) True mettl22
XM_043235242.1 mRNA downstream 30710 9941285 ~ 9963128 (-) True abat
XM_043233714.1 mRNA upstream 163808 10297430 ~ 10315726 (-) False fbxl16
XM_043233713.1 mRNA upstream 163808 10297430 ~ 10308618 (-) True fbxl16
XM_043229496.1 mRNA upstream 198601 10332223 ~ 10346307 (-) True gsg1l
XM_043229154.1 mRNA upstream 236434 10370056 ~ 10372203 (-) True si:ch211-76l23.4
XM_043235939.1 mRNA upstream 251828 10385450 ~ 10389073 (-) True c3h16orf89
TU27537 other downstream 530933 9426572 ~ 9462905 (-) True G18433
TU27085 other downstream 1595010 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 1682489 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 1774783 8218902 ~ 8219055 (-) True LOC122342198
TU27061 other downstream 1784745 8207764 ~ 8209093 (-) False LOC122339740
XR_006250486.1 other upstream 260692 10394314 ~ 10396341 (-) True eef2kmt
XR_006250541.1 other upstream 645479 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 646480 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 878314 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250462.1 other upstream 1560650 11694272 ~ 11714719 (-) False map3k3

Expression Profile