RNA id: XM_043225577.1


Basic Information

Item Value
RNA id XM_043225577.1
length 2853
RNA type mRNA
GC content 0.41
exon number 12
gene id zgc:153292
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11355874 ~ 11361915 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCTGATCAGACGTGCTACAGCTTTGCCAAACATACGTTTACAGacgtatttgtgtgtttgtaaatataatCACTTAAGGGGCTGTTGTCATcataatgttttgtgtgtggcATTTTTGAGGAGCTTTTTGTGAACGGTAGGGACTTCGAATCGGATCTTtacctaaaatattaatttactgaTTTCCTTCGTATGTTATCTGTGCATGGAGACACATGTCTCTGTGCTATGAGCGAGTCATCCACTCAACAccgattcatttaaaacagctcgttgaccttttttttttttttctttgaatacGGGCAGGTGAGTTTACTTACTTTTTGTAACTATGGCTTcatcaaactataaaaaaaagacagcggaagtctaaataaaaacacGATGTCGTTACATTCCAGACATTCATAATTGGCCttgatgaaatgtttaaaaaaatgaatagttaaaagaaaaaaaaaactcagaaattaaaatgttgttataatTTACTCCTGCCCAAACCCATTAGACATACATTAAAATAcgttaaaacatttactttgatGTGCTGTAGAAGCACCACCGGGGGTTTTACCCTAGTACCTTCTTTATCAGTAATACTGTTTTGTTTATATCGCTATCAGAGCTGCGAAATAAGGAGGTTTGGAGATATTTATATACGTGCAGAACAAACCGCTCTCAATGAAAATGGTGCTCTATCTCAACTGAGATTATTAGAAGTGTCCGTTAGGTGGCAGTACTCCGTGTTCGATCTTCCGTTCAATCCCACCAGAAGAACAGTTCCCGGAAATACAAAATAAGATGCGTTTTTAACGTTGGGAATTGCATagaaattgaattatttaaaaaatgccagTGTGTTCAGCGTATAAGTGCAAGAAGCGTTCAGATAGAGAGTATAAAGAGGCGTACAACAGGGGCGAGTTTTCTTTTCACAaATTCCCGCTAGCTGACGGcttgagagtgagagagtggcTCCGTCGGATGAGATGGCAGAACTGGTGGCCAACGGGAAACTCCGTCCTGTGCTCGGATCATTTTGAGAAGGACTGCTTTGAACAAGTGGGCAGCCACAAACGACTGCGCAAAAATGCTGTCCCCACTATCTTTAATTTCCCCAAACACCTGCAGTGGAAGGTGCCAGCTGTCAAGAGGCGATCTCTGaATCGTAAGCCCGTTGAAGTGCCTATCAAACCAAAACCAACCCCGGTGTCCGCACCAGTAACACCACGGCTCGAGGGGAAGTTTGTTCACGTGCCTGTGGACTCTGATGGTTCTGGCCTCGGCCCCTTGCACGCCGGCAGCTTCCACGATGACTACTGCAAACCACAAGTTAATAGTTGTTGGTTTTTATCTCTCTTTTGTAGAGCGTTCTACGCACTTGCACGTTGTTCACCGGTCGCTGTGTTTCCACAGAGCTTTCACTGGATGAAGCTTTCAGAGGGTGATGATGAggctgatgatgaagatgatgatgctAGTGATCCTGGAAACGATGTCGCTTATGATGATGCTCCTCTTGAAACGCCTGAAAATCCAAACACTCAGTTTATTAGGGTGACAGAGAGATGGCAGTGGTTGAGTATAGATGTAACAGGGCCCTTTCAAGAAAGCAAAGGCCCCTTTAGCCACATTGTAGTCATCTGTGATTATTACTCTAAGTGGATTGAAATCTTTCCATCAGAAAAGCCTAATTCTGACTCCATTGCCCTGCTTATGTGCGACGCCATTTCCAGATATGGGTTTCCTCTGGGATTTCTCACACCTTGGGGTGCTAGAGGGATTCAGGTCAGAACGGTTAACAGAGCGCTCAATAATATTCTGATGATAAAAGACATCTCCCTTGTCTCCCGGCATCACCAGGCTTCGCAGCTCGAACCTCACACACAATACCACATTGTCAATATGGTGGAAAATCTGGTAAAGAAGTATCCAGACAGATGGCATGTTCATCTGCCTGTCAGTGTGCTGCGCTTTAACTGCAGTGTGCATCCAGAAACCAAACGCAGACCTCTGTCGCTCCATCGCAGTGAGGGAACTAAACCTTATACATCACCCAGAGATCAGCCGcTCAGTGAAGATGACCTTGCAAAATACACCTTCAAAATCCAGAAACCAAACCCTTTAAAAGAAATTGAGGCACTAAAACGAATATTCCGAGAATCAGCGGACTGCATTgtcatttcataaaacaaaaaacagTGTGCCTGTTGTAACCGGAGTGTGACTTCAAACTGAAGGTCCAGTGAGGAAGAAGCTCAGTAAAGACAACTTGGGCGAAGGATGATCAATAATGAGCCGTTACAGAGTCATAGAAACCCAGACTGATATGTTATTTGCGATTTTCATATTGAAATAGTTTGCAGCATTGTGAATGCATACCATTAAAGGTATTAAAGTATGTAGTACTAACTGTAAAAGAAAGTTTGTGTATATGAAAATAACCAATTCAACCAGATTGAGCCcacaaaagattatttaatgttaataaatccACAAATACTCCTGTGAGTTGCAGGCAATCCTAAAGGATATTGTGGAAGTCTGAAATGAAGtgtgaatgtttgtgttttgggtttttttccaaataaaccTTGTATATTGTTGCATCAACATGAATTAACCATTGTTTTACTACAAAGAAAGGTTACTATAAAGCAACTATGGCAACCACAAATTAACCATAGTTTAGCCGTGGTAATTTGTAGGACATTTCAGGTTATAGAAATAGTACTAAGaccaaaaaaacatggttactaCACTTTTACTATAGTAAAAGCATAGTTATTTTGTAAGGGAGTTTATTCGTCAAGGTTTTGCTAAGAATAAACTCTTTATACTCGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28458 lncRNA downstream 20074 11333756 ~ 11335800 (-) False G19108
TU28460 lncRNA downstream 20074 11334983 ~ 11335800 (-) True G19108
TU28461 lncRNA downstream 20074 11334983 ~ 11335800 (-) False G19108
TU28324 lncRNA downstream 586476 10767300 ~ 10769398 (-) True G19019
XR_006248708.1 lncRNA downstream 660370 10689419 ~ 10695504 (-) True LOC122334019
TU28475 lncRNA upstream 48706 11410335 ~ 11410716 (-) True G19117
TU28478 lncRNA upstream 50356 11411985 ~ 11414305 (-) False syt17
TU28479 lncRNA upstream 51778 11413407 ~ 11414305 (-) False syt17
TU28853 lncRNA upstream 408093 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 482385 11844014 ~ 11844199 (-) True G19381
XM_043228865.1 mRNA downstream 562 11352808 ~ 11355312 (-) True elob
XM_043228858.1 mRNA downstream 3078 11346726 ~ 11352796 (-) False LOC122331276
XM_043228853.1 mRNA downstream 3078 11346726 ~ 11352796 (-) False LOC122331276
XM_043228844.1 mRNA downstream 3078 11346726 ~ 11352796 (-) True LOC122331276
XM_043228797.1 mRNA downstream 11859 11336383 ~ 11344015 (-) True armc5
XM_043235484.1 mRNA upstream 8439 11370068 ~ 11375369 (-) True arl6ip1
XM_043230155.1 mRNA upstream 14560 11376189 ~ 11403099 (-) False smg1
XM_043230146.1 mRNA upstream 14560 11376189 ~ 11403099 (-) True smg1
XM_043235871.1 mRNA upstream 51780 11413409 ~ 11429179 (-) True syt17
XM_043235872.1 mRNA upstream 51780 11413409 ~ 11429178 (-) False syt17
XR_006248663.1 other downstream 291291 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 575678 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 576639 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 959533 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 1892969 9426572 ~ 9462905 (-) True G18433
XR_006250462.1 other upstream 332643 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 351191 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 354093 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 354093 11715722 ~ 11727975 (-) False limd2
TU28832 other upstream 354093 11715722 ~ 11727975 (-) False limd2

Expression Profile