RNA id: XM_043226514.1


Basic Information

Item Value
RNA id XM_043226514.1
length 2996
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC122329871
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1456950 ~ 1463253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCACACCAGTTTCTTCCTGTTTTGATGAGGGGAGCGGCACATCTCTGACATACAGCGCTCCAGAAACAGAATCTCTTCTTCTTCGTTGAAGTTGTCGTGAAAGAGACTTTACGACATTCACGTGTAATGAATGACGAAGAGACAGACATCAGGACTAAGGAAAGAGACGGATGAGAAATCAGCATGTCCAGCAGAGAAAGCCGAGCTGTTGGTCGTGGTTCTGCCCGCAGGAGAAGCAGCAGCAAAAAAAGAGACCCACCCAACATGATTGAAGCGACTCCTCTGAGGATCGTTCTTCTGGGTTCGAGCGTGTCTGAAAACAGTCTGGTGGGGAACTTCATATTAGGGCGAGCAGCATTCGACAGCGAAGCTCCTCCAGACATTGTAGAGAGAGTCAGAGGAAGACTGAAGGACAGACACGTGATCGTCATCAACAGTCCTCAGCTGCTGCAGACGAGCATCTCGGCTCATCAGATCACACGGAcggtgagagagtgtgtgaatcTGTCTGATCCGGGGCCTCATGTGATCGTTCTGGTCCTCAGTCACGAGCAGCGTTCAGCAGAAGATCAGGAGCGTGTGGAGAAGGTgctgctttctttctctgagaGCGTTTATCGACACGCCACAGTGATCACCACACAAGAGCCCACAGAAGCCAGTGACATCCTACAGaaaatcattcagaaatgtGCAAACAGACACTTCAGACTTCAGAGAAGCAGTTCTCCTGAGGATCTTCTTCAGACGTTTGAGGAGATTTCGAAAGTGAATAATAGACAGCACCTGGTTTGTGCTGAAGTTGCAGAGTGTGTGAAGCTGAATCTGGTTGTGTGTGGGAGCGATGGGAGATTAAAATCCTCCGTATCAGAGCAGATCCTGCAGCAGACAGAGAAGGAGCTTCATGATCATCAGATCAGTCTGGTGGAGCTCCCAGCTCTCAGTCAGCTCTCCGAGGAGGAAGTGATGCGCCAGGCTCTCCACTGCGTGTCTCTCTGTGATCCTGGAGTTCATGTTTTCCTCCTCATTATTCCTGATGCTCCACTCAGCATTGAAGACAAAGCAGAAATGGAGGAGATGCGGAAGATCTTCAGCTCAAACCTCAGCGAACACATCATGGTCCTCAGAATCAAAGAGAAGTTGACAAGTCAAATGAATACAGCTCCTTCTTCATCTGCTGAGATGATTGCAAGtcgatgttttgttttggagagCAGCTCACAGATTCCAGATCTACTTCAGGATGTGGAGAACATGGTGAAAATGACAGATGGAAGATGCTACACGACCTTCATGTGCCTTCAGGATCGACTAGAACTGgagagaaacaaacacagagtcGAAATAGAGGACCTGCGAGGATCTGTGATGAAAACAAcaggtaaaaGTGTAACACACAACGATGATCTGAGGATTGTGCTGCTGGGAAAGACGGGTGTAGGGAAAAGTGCATCAGGAAATACTATACTGAGAAGAGTAGCCTTTAAATCAACAATGAAATCAAGCTCAGTGACCAGAGATTGTCAGAAGGAAATTACAGAGTTCACCAAAAGACAGATAACAGTGATCGATACCCCAGGCCTGTTTGATACTGGGGTTGATAACGTTGAGACCAGGAAGGAGATTGTGAAGTGTGTCTCTATGGCAGCTCCTGGTCCACATGTGTTTCTGCTGGTGATTCAACTGGGACGAATTACTAAAGAGGAGAAAGATGCAGTGCAGATGATCCAGGAGATGTTTGGAGAGAAATCCAAAATGTACACCATTGTGCTCTTCACCAGAGGAGATGATCTTAAAGGAAAAACAATTCAAGAATTTATTGAAGATGATGATTTTTCAAAGAATCTCGTCCAGCAGTTTGGCAAGAGACACCACGTGTTCAATAATAACGAGACTGAAAACCGAAAACAGGTTTCTGATCTGCTGGATAAGATTGACTGTATGGTGGCAGTGAATGGAGGGAGTTTCTACACCAATGAGATGTTCGAGAAGGTGGAGAAGAACATCATAGAGGAACAAGACAGAAtcatgaaagagaaagaagaagagatcAAGAGAATAGAAGAAGAGCTGAGAGCCAAATATGAATCGGAAATTGAAcaaattaagaaagaaaacgAGCGAGAAAGACAGGAGATGCAGAATGAACTGATAAAAAGAGAAGAGGAgtttaaaaagagagaagaggagatcAAGAAAGACACAGATGATAATGTGAGAAAAGAGATGCAGAGAAAACTGGAGGAGCAAAAGAAACTAATTGAGgagcagaataaaagaaaaaaaatcttagaagAGGAACAACAGAACTTCATAAACTACCTGATAGAAAAGCATGAGAAAGAAAAGCTAAAGCTCCAGAAgagaattaaaagaaaaacaagaaaacaagcagAACATGAATATCGTGAAAATCTTGAGAAAGAATTGGCTAAAGCTTTAGATGTAGCTGAAAAAGAAGTACCACATACTACAAAACGAGCCCGTTACTGTAATCAGTTTGATCCTGATGATGAAGGATCTGGTAACGTTCAGCACTTTGTGAATTGGATTATGAGATGATGTTCTGAATGGCGCATTTAAAATTCAGTCTATGTGTactttgatgatttttttttttcatctctgtAAAGAAATACTTcattaacttttgttttgtttttgctcatcATGTCTTTGCAGATATCTATGGAATCTATGGTTTCTGCCATTTATgagtttttatctcacaattctgactttttcttgaATTTCTGACTTTTTGTGATGTAAACTTGCAAGTGTAAATGTTtgcaagtaaaaaatataaaaagactgaaaagaatgaaagttaaaaagtcacaatttacctatttattttttattcagtagtttAATATTCAGGAGTTAATATTGTGAATGGTTTTGTgtcatttcatacattttttaaaactctatctatctatcttaaaGCAAGTTTACTTTTAACTGTGAATAAACACattgatcaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23731 lncRNA upstream 15221 1441259 ~ 1441742 (+) True G15972
TU23726 lncRNA upstream 41764 1414215 ~ 1415199 (+) True G15967
XR_006248053.1 lncRNA upstream 72069 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA upstream 72199 1383248 ~ 1384764 (+) True LOC122330682
XR_006248071.1 lncRNA upstream 175792 1279263 ~ 1281171 (+) True LOC122330723
TU23696 lncRNA downstream 22318 1485571 ~ 1490779 (+) True G15944
TU23779 lncRNA downstream 151907 1615160 ~ 1615529 (+) True G16004
TU23770 lncRNA downstream 156654 1619907 ~ 1865229 (+) False G16002
TU23788 lncRNA downstream 225789 1689042 ~ 1704676 (+) True G16008
TU23818 lncRNA downstream 307504 1770757 ~ 1979709 (+) True G16027
XM_043227058.1 mRNA upstream 3879 1450238 ~ 1453084 (+) False LOC122330185
XM_043227052.1 mRNA upstream 3881 1450239 ~ 1453082 (+) True LOC122330185
XM_043227748.1 mRNA upstream 38651 1415617 ~ 1418312 (+) True LOC122330593
XM_043226812.1 mRNA upstream 48037 1395848 ~ 1408926 (+) True LOC122330032
XM_043227278.1 mRNA upstream 67264 1387484 ~ 1389699 (+) True LOC122330340
XM_043226144.1 mRNA downstream 45240 1508493 ~ 1516411 (+) True LOC122329679
XM_043226155.1 mRNA downstream 54255 1517508 ~ 1525476 (+) True LOC122329687
XM_043227300.1 mRNA downstream 95098 1558351 ~ 1565942 (+) True cdc42ep1b
XM_043226042.1 mRNA downstream 104092 1567345 ~ 1579821 (+) True LOC122329645
XM_043226055.1 mRNA downstream 127425 1590678 ~ 1601654 (+) True LOC122329650
XR_006247969.1 other upstream 54795 1395847 ~ 1402168 (+) False LOC122330032
TU23709 other upstream 64113 1390739 ~ 1392850 (+) True G15955
TU23688 other upstream 165399 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 407703 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 447660 1005995 ~ 1009303 (+) False LOC122330135
TU23776 other downstream 96134 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 152455 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 152983 1616236 ~ 1649494 (+) True G16003
TU23769 other downstream 156059 1619312 ~ 1865229 (+) True G16002
unassigned_transcript_273 other downstream 157670 1620923 ~ 1620995 (+) False trnar-ccu

Expression Profile