RNA id: XM_043226706.1


Basic Information

Item Value
RNA id XM_043226706.1
length 2253
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC122329966
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1376449 ~ 1380026 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaagaagaggaggaggaggaggaggaggaggaggaagcgAAGGCGTTAGTAAGTGAAAGGGACGAAAACGCCGTTTACTGAAATTACGGCGTTTTCCAACGAGGAATCATGAACATAGCTGGATACACAGATGTCTGTTAGCTTTTTGAAAATGGCCACGAGTATTGAAGGTCTGAATTTGGTCTTGATGGGAAGAACAGGAGTCGGAAAAAGTTCGTCCGGAAACACAATACTGGGAAGAGACGTTTTCAGATCAAAGAGAAGCTCCAGATCGGTCACGCAGGATGTTGCTGTTGAATCTGCGACTGTTGGCGACTTTCCAGTCACTGTTTATGACACACCGGGATTATTTGACATGCACACAAGTGAAAACGAGGTCGATCTAAAATATAAGAGCGTTTTACAGAAATGCGAGTCTGGTCTCTGTGCATTTCTGCTGGTCATCAAAGCTGACCGATTCACTGAAGAAGAGCGAAGAACCGTGGAGAAGATTGAGAAGCTGCTGGGAAAAGAACGGCTGGAGAAAACCTGGATTCTCTTCACCAGGGGAGACGAACTGGAGGAAGAAAACCTGACAATACAACAATTCATCAGTGAGACAGAGCCGCTGAAGAAACTCATTCAGAAATATAATCACAGATACCATGTGTTCAACAACAGGGAAAGAGGACCCACTATGCAAGTTAAAAAGCTTCTTATAAAAGTGCTTACCGAGATACTGAAGCAGCAGCCACTGGTGACACGAGACACTACATCTAGAAAAACACTACATTTTAAACCAGACGCTGCTGTCTCCAGTCTCTCGTCCAGGAGGATAGTTCTTCTGGGTCAAACTGGTGTTGGGAAAAGTGCGTCTGGAAACACAATCCTGGGACAGAGAGAGTTCAGATCTAAGATGAGCTTGAATGCGGTGACCAGTGAATGTTCAGAAGCTCACGCCACTGTTTCGGGCCGATCGGTGTCTGTGGTAGATACTCCTGGATTCTTCAATGTACAGATGAGGCCTGAAGACTTAATAACAGAGATAGCcagaagtgtttatttatcCAGTCCTGGGGCTCACGCTTTTCTCATTGTGTTTCCTGTGAATATAAGACTCACTGATCAGGAGTTACAGATTCTTCAGATGATTGAGCTCATGTTTGGAGAAGAAGTGTTAAAATACTCCATCGTTCTCTTCACTCATGGAGATCAGCTGGAAGAAGAGTCTGTAGAGGAACTCATTAAAGAGAACTATATATTTAGACATCTAGTAGATCAGTGCGGAGGAAGATATCAGGTGTTCAACAATAAAGATCTGAATAACAGAGAGCAGGTGAATGATCTGCTGCAGAAGATTGACTCAATGATAAAGCAGAACGGAGGACGACACTACAGTAATCAGATGTTTGAAGATGCTCAGAGATTCAGacgagaggaagaagaggaacgAAGACGAGAAGAGGCAGAGAAGAAAGTCCGAGCAGACATTCGTGAGCATAGTAATGACCTAGAAAGATCTGAAgctgagagacaaagagagaaagaggagaaaacaCTTTTGAACCGTTTTAAGTATCATTGTGTGGTTGCCGGAGTGGTTGTTGGAGCTGCTGTCGCTGCACCTCTTTCTGTTATGTCTGCGCCTCTTTCTGCTTTGGCTGCACCTGTCGTTGCCGCTGCTGCAGTTGCTGGAGCTCTTGGAATTCATCTCGGTGAAGCTTTTGTTgctcagaagaagaaaaaagagcaGGGAAAAAATAACGGAAGctctaaaatgtgaaatattcaaCAAAGCCGTAACGCAGCTGCTGCATGCTTCATTTCGACAGCAGATGAAATCCGCCTGAGAGAAATGCATGTCTTAGTTTGACGTGTGAGGATCAGGGTCGAGCTGTAGACCACTCTCCGCCTAAGAACAGTAGTAGTAGAAACATCAGAAAAGCTGGACACTATAATCTACATCCAGCTGATGAGATGCACTGGACCGGCAGCAGTCagAACAGAACCTGTGCATCTTTTTAAACCATGTTTAGCATGTCATTATCAGTATTTCAGGCTGCATGAGGCAACCGAGCGTCCTCATGGCCTCAACGAAGATCTTCAAGACACTTCTACACAAGATCTTTGTTCTTTAATAAGATTGTTTGTCAACAAGAAAGACTGTGAAAGTTTTGCTCTTTGTGAGAGTTGCTGCTGATTCCTAtaacaaacatttgttaaattcaATTCATAATGCAAGCAATAAAGAGGCCAATTTGGCAATATTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248071.1 lncRNA upstream 95295 1279263 ~ 1281171 (+) True LOC122330723
TU23674 lncRNA upstream 135419 1240346 ~ 1241047 (+) True G15929
TU23671 lncRNA upstream 160861 1215316 ~ 1215605 (+) True G15927
TU23669 lncRNA upstream 162838 1213325 ~ 1213628 (+) True G15925
TU23652 lncRNA upstream 223238 1152825 ~ 1153228 (+) True G15911
XR_006248053.1 lncRNA downstream 3222 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA downstream 3222 1383248 ~ 1384764 (+) True LOC122330682
TU23726 lncRNA downstream 34189 1414215 ~ 1415199 (+) True G15967
TU23731 lncRNA downstream 61233 1441259 ~ 1441742 (+) True G15972
TU23696 lncRNA downstream 105545 1485571 ~ 1490779 (+) True G15944
XM_043230100.1 mRNA upstream 2176 1372532 ~ 1374290 (+) True LOC122332730
XM_043226420.1 mRNA upstream 141562 1230001 ~ 1234904 (+) True LOC122329817
XM_043226863.1 mRNA upstream 151549 1217521 ~ 1224917 (+) True sox10
XM_043226742.1 mRNA upstream 178428 1188018 ~ 1198038 (+) True kcnj4
XM_043227223.1 mRNA upstream 197125 1176572 ~ 1179341 (+) True LOC122330304
XM_043227278.1 mRNA downstream 7458 1387484 ~ 1389699 (+) True LOC122330340
XM_043226812.1 mRNA downstream 15822 1395848 ~ 1408926 (+) True LOC122330032
XM_043227748.1 mRNA downstream 35591 1415617 ~ 1418312 (+) True LOC122330593
XM_043227058.1 mRNA downstream 70212 1450238 ~ 1453084 (+) False LOC122330185
XM_043227052.1 mRNA downstream 70213 1450239 ~ 1453082 (+) True LOC122330185
TU23688 other upstream 84902 1290969 ~ 1291564 (+) True G15939
TU23529 other upstream 327206 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 367163 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 607494 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 740857 625365 ~ 635609 (+) False LOC122330407
TU23709 other downstream 10713 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 15821 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 179361 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 235682 1615708 ~ 1646532 (+) False G16003
TU23778 other downstream 236210 1616236 ~ 1649494 (+) True G16003

Expression Profile