RNA id: XM_043226794.1


Basic Information

Item Value
RNA id XM_043226794.1
length 2569
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC122330011
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1078933 ~ 1084889 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAATCACTGGTGGATATTGAATGAACACCACTACATAGTGCACGAGATGCCTTAAGTTTCTCATGTTCGTTATTTTGGGCTGGATAGGTGGTAATTGCTGAACGAGCAGTATAGTATATTTCACATGAGGATTGACTATCTATGGTGTGTCTGGAACAGAGAATGAATCTGAGCCGAAGACGGTGATtgagggagattcagtcactctaaACACTAACCTTTCCCAACTACTGAACGACGATACCATACTGTGGATGTTCGGATCCAATGACTTCCCCGTATctcaaataaagagaaagaatgaCTTTAACTCGCTTTTCCTCACTGACGATGTTAGATTCAGCAGCAGACTACACGTGGATCAAAAGACCGGATCTCTCACCATCGCAAACACCAGAACCAAACACTCAGGACAATATAAACTCACCGTCTCTAGAGAAACAACTACAACGAAGACTTTTAATGTGACTGTCATTGGCGTGCTCACTGAGACAGACGAAATAACATCACTGTCAGTATCAGTGACAGAAGGAGATCCCGTCACTCTTCCTGGCGATGCTGAAACGCACAAAAACGCTCTGATGTTGTGGAGGTTCGGAGACAAAGGAATCCTCCTAGCCAAAATCGACTCTGAAACAGGTGAAATCTCACTGAACGACGCCGACGAGAGATTCAGAGATCGCCTGCAGCTGAATCAGAACGGGTCTCTGACCATCAAGAACAGCAGAAGCGAGCACGCCGGGCTTTATGAGCTCCAGGTCAAAGGCCGCGAGAGCTCACAGCGAGTCCTTCTTTCTGTCAACGCCGTCCCAGATCCGGGTCTTTCTTCAGGGGCTAAAGCAGGAATCGCTTTTGCTGTTTTAGTTCCTGTTGTGCTGCTGGCGGCGGCAGCCCTGGCTCTGATTTACTATCGCCGCAGGATctctaaattaaaaaagcaagtGGgGACCTTGACCCGCACAAACACAAGTGAAGCTGTGGCAGGTGAAGAGAAGCAGGAGACAGCGACGGAGGGAGATCCTTTAACACTACGGACCGGtctcactgaaataaatactgACCAAATTATAAAATGGTGCTATGAAGAAAATTGCATCGCTGAAATCAATGGAGAGACCAGACTCTCATCTACATTTGACAATGCTGACAGGAGATTCATGAGCAAACTGATGCTGGATGAGAGAACTGGAGACCTCACTATCAGTAACATCAGAACCCTACACAATGGACTCTATACACTAACCATCAGAAGCAGCGGGAAGACCACACGCAAGAGATTCGTTCTCACTGTCAATGTGGTGTCCATGTCCGTGAAGGAGGGAACGTGTGCCCTGCTCCAGACCGGTGTGGAGATTCAGCCGGAGGATCTCGTGCTGTGGACATTTGGAGCCCAAAACCACCTCGTCATTAAAAGTGATTCAGGAAAGACGAGCTCCGGTAAGCGGTTTAGAGACAGACTGGATCTGAACAGGACCACTGGAGTGCTGACCATCAAAAACATCCGGCTCACAGACTCCGGACTTTTCAAACTTCAGATCATCAACAGCGAAAAGACCACCTTCAAAAGAATCGAAGTGACGGTCACTGCTGAAGGAGTGAATGAAGAAGCGACTGCAGTGATGCCGCTGTTGAATGAGGAAGTTACCGACGAATGAAACCCGCAGCACACGACGAGTCCGGTTTGAGACACGCCCACCACTGTGACATCATCCACAATCAGGCTCCACGGCATTTCTGCCTTCGGTGAAAAATGTGAGAAGCGTCGGGGAGAAGTTGCAGTGAATTCTTGTGTGATGAGCGCACGACGAAGGTTTGGACGTGTTGAGCCTCAAAGTGAACCATCTTCTGCCCAAACTGAACTGATCCGTGGTCCTGCTGGGACGAGATCTGAACTCCAGACAGTCAAGATCACGCTGAAACACTGAACAATTTGTCGCTTGAAACACTGTTTGCTTTTTACGGttaaatatctgtatttattttcttatcaaTATTCCTCTGTCAATCGAATTTGTGTTGTAAGCTATGCTTCATTAAGTCGGTCAAAGGTTAAAGTAAGTCTCCATTTCAAGgtagttttgttttatgatgatCACTGATGGTGCTGCTCGTTGTATTTGTGCTGGTCAGACtgaaaaatacaccaaaaatgTAATCAGGTCATCAATACACCATCATCATTGTCTACTGCTCTTTCCTACTTTGGTTTGACTGATTAACAACACATTTTATAGCCAACTGAGAGATCAGTTCAAACAATAATGATGGTATTCAGTCACAAGATGGAGCTAAAGCATTAGGAGAGTCATATTTGGCTGCACTCTATAAACCTGAAAGCCTAAATACACTAAACACGTTATaatcaaatgtgcattttatattttgcttggagatatttgtaatttatttacaaagttTCAGCTGTTAAAAGCTAGTTTTCCCAGAGGCTCGGTTCTGTGGTTCAGAGAGACACTGtagttataaaaaaatctgtcctttttttgttttgtttttttacaaattttcaaTAAATTGGTGCAGTTGTCCTCAGTCTCCTGAAGATGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23542 lncRNA upstream 9646 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA upstream 9646 1069689 ~ 1070138 (+) False G15833
TU23489 lncRNA upstream 119690 959579 ~ 960094 (+) True G15806
TU23486 lncRNA upstream 123980 955507 ~ 955804 (+) True G15803
TU23208 lncRNA upstream 188897 890428 ~ 890887 (+) False LOC122330733
TU23616 lncRNA downstream 30506 1115395 ~ 1115671 (+) True G15882
TU23617 lncRNA downstream 32334 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 35751 1120640 ~ 1133792 (+) True G15886
TU23624 lncRNA downstream 36451 1121340 ~ 1123300 (+) True G15889
TU23622 lncRNA downstream 45003 1129892 ~ 1131475 (+) True G15887
XM_043227149.1 mRNA upstream 15460 1062276 ~ 1064324 (+) True LOC122330262
XM_043226875.1 mRNA upstream 28633 1047012 ~ 1051151 (+) True LOC122330066
XM_043229957.1 mRNA upstream 33926 1035252 ~ 1045858 (+) True LOC122332610
XM_043229905.1 mRNA upstream 60432 1017707 ~ 1019352 (+) True LOC122332569
XM_043227127.1 mRNA upstream 66141 1011311 ~ 1013643 (+) True LOC122330251
XM_043226728.1 mRNA downstream 400 1085289 ~ 1089633 (+) True LOC122329984
XM_043227045.1 mRNA downstream 5603 1090492 ~ 1102100 (+) True LOC122330159
XM_043227025.1 mRNA downstream 5931 1090820 ~ 1094906 (+) False LOC122330159
XM_043227036.1 mRNA downstream 14110 1098999 ~ 1102100 (+) False LOC122330159
XM_043227029.1 mRNA downstream 14159 1099048 ~ 1102100 (+) False LOC122330159
TU23529 other upstream 30524 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 70481 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 310812 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 444175 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 522703 553698 ~ 557081 (+) True G15563
TU23688 other downstream 206080 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 305850 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 310958 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 474498 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 530819 1615708 ~ 1646532 (+) False G16003

Expression Profile