RNA id: XM_043227149.1


Basic Information

Item Value
RNA id XM_043227149.1
length 1666
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC122330262
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1062276 ~ 1064324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGGGCATTTCCCATCACGTGACATGTACTTTTTCGTTCAGCTTCCGAAGGCTCGCCGTTATCTGAATGCTACTGTAAGTTACACAAACTCTGAAGGATGTCGGCTTCGTGTACCACAGCAGAGGCAAAAGATCCTGACGATATTCAAACGAGGAAAAGAAGAGGGAGTTTTGATTTTAAGCCTCCAAATATGTCCACGATGAGGATGGTGCTCGTAGGAAAGACCGGAGCTGGTAAAAGCTCTTCAGGAAACACCATCCTGGGAAGAAAAGCTTTCAGAGCCGCCCAAAGTGCTTCATCTGTTACTAAAGAGTGCTCGAAAGCGACTGGAGAGGTGGCTGACCGTCAGCTGATGCTGGTAGACTGTCCAGGGATCTTTGACACTTCGCTTTCAGAGAAAGAACTCATCAAGGAGATGAGCAAATGTATAAACATGACGGCACCAGGACCTCACGTGATAGTCCTGGTCATCCAGCCTGGACCGTTCACTAAAGAAGAGAGACTCTCTGTGGAGAAGATCAGAGCTGTATTTGGGGAAgaagcagacagacacacaatcATCCTCTTCACTCACGGCGATCAAATCTCAGAAAGCTTCGAGCAAACACTGAGCGAAGCACGGCATGATTTAAAGCATCTCGTCGAGTTATGTGGCGGACGATATCATGTGTTGGACAACACAAAGGTTCATGATCGCAAGCAGGTTTTGGAGTTTCTGGATAAGGTTGATAACATGTTGCACACGAACGAGGACAAATATTACACCAGTGACATGTTTCGACGCGTGGAAGAAATGCTTCGAGACAAAGAAGAGGGGCTCAGAAAAGAGTACAGCCAGACGATACAGGAATTAACAGACGCATTTCACGAGGAGAAGACCCAACTTGAGAAGACCATCGAGCAACTGAAAAAATCTGGGCGGGAAAAGGaccagaaaattaaaaagttgaaaGAGCAACTGAAAAAGGAGGACACGCATTTTAAAGAGGTTAAGCGTTTTTATGAGCAGAAGCACAGAGCTGTGAGAGAGGAGGTGGAAGAGACACAAGTCGACGAAAACATCCCAGAGATCAGAAGACAACTACAAAAGCTTCGTATCTGAGATGCTGTTGAGAGTTCACTGACTAACTGATTGATAATCAATACGATCCTTTTTTTTGCTATACGTTTTAATATAGCATTAGTTTAATCAACGGGCTCTCTTGAATGTGGCCCTGCTCATGTTTGTGTTCTGACCGTGGTAAAAACCGCTTAAGAccttttaaatgccatttttgatACAACTAAATAACATCAAACTATAAAACACtgcaactaattattatttagcaaCATGTTCCACCGAAATTTTACGTTAAGTCCATTTCTaactaattctttttttaattggctcAACCCTCAGTGAACTTGTTTTCTAGTCaactaaaattttttttatgtatagtGCTGTTGTCACgtatctgttgttgttttcatgtcccATGTGCTCCGTGACCTGctttctgttaattgtatcattgtgttcaggtgtttttAGTTCATTGTCATTTGTGTATATAGTTCCTGTTCATTTCAGGTGGTTttatgtgtggtttttgttacctgcctgtctgcctgtagTAGTACTATTTAGTCCTTGGTCTATGATTAAACTTATTAAGAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23489 lncRNA upstream 102182 959579 ~ 960094 (+) True G15806
TU23486 lncRNA upstream 106472 955507 ~ 955804 (+) True G15803
XR_006248077.1 lncRNA upstream 171370 875671 ~ 890906 (+) False LOC122330733
TU23542 lncRNA downstream 5365 1069689 ~ 1070138 (+) True G15833
TU23543 lncRNA downstream 5365 1069689 ~ 1070138 (+) False G15833
TU23616 lncRNA downstream 51071 1115395 ~ 1115671 (+) True G15882
TU23617 lncRNA downstream 52899 1117223 ~ 1117666 (+) True G15883
TU23621 lncRNA downstream 56316 1120640 ~ 1133792 (+) True G15886
XM_043226875.1 mRNA upstream 11125 1047012 ~ 1051151 (+) True LOC122330066
XM_043229957.1 mRNA upstream 16418 1035252 ~ 1045858 (+) True LOC122332610
XM_043229905.1 mRNA upstream 42924 1017707 ~ 1019352 (+) True LOC122332569
XM_043227127.1 mRNA upstream 48633 1011311 ~ 1013643 (+) True LOC122330251
XM_043226983.1 mRNA upstream 52845 1005983 ~ 1009431 (+) True LOC122330135
XM_043226788.1 mRNA downstream 14609 1078933 ~ 1084889 (+) True LOC122330011
XM_043226794.1 mRNA downstream 15460 1079784 ~ 1084889 (+) False LOC122330011
XM_043226802.1 mRNA downstream 15491 1079815 ~ 1084889 (+) False LOC122330011
XM_043226728.1 mRNA downstream 20965 1085289 ~ 1089633 (+) True LOC122329984
XM_043227045.1 mRNA downstream 26168 1090492 ~ 1102100 (+) True LOC122330159
TU23529 other upstream 13016 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 52973 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 293304 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 426667 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 505195 553698 ~ 557081 (+) True G15563
TU23688 other downstream 226645 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 326415 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 331523 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 495063 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 551384 1615708 ~ 1646532 (+) False G16003

Expression Profile