RNA id: XM_043235440.1


Basic Information

Item Value
RNA id XM_043235440.1
length 1746
RNA type mRNA
GC content 0.42
exon number 15
gene id tnnt1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11893395 ~ 11900727 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtattagaaAACCAAAAGACATTCTTACCAATAATCTCCTAGTTGGAGTTAgaagatatgtatatataacgcTACTCTTAGTCAacataatgtgttaaaataaagtgataccTAGTATTTTGGCTAATTAtctgggtaacactttatttcgataaaGTCTCCTTCACACATTCTGCTAACAGTAATTAACTTTGCGACTACATGTCAGCTAGTCATAAGAGCATCTCTccgctttattttaaaggatctgaatttaaaaaaaggaaaaaagattttcttttatattcccGACCAGTACCTATAAGAAATGAGAGCCCATCCATTTACCTCAAAGTTGTTTTAGCCATTAACTTGTTTTACATTATGTTGAATACAAAATATGTCTTCTGGGAAGAATTGTGTCTAAATCCCCTGTGCTATTTTTGTTCCCAActgtccttttgttttttttctatctctTTTTATATCcctgtgtttgttgtgtgagGTCATTCCCCCTGTCTCCCCTAATCCCTCGTGGTGGTCATCTTTCTGTCCCAGGGTTCATTTCTAATCCATCCATGGTCCTATGCCGTAGCTGCTAACACCCTCCATCTGTCCCTGTCCTCATATAAAAACGAGCCATTGTCCCGCATTACAAAACTCTCTTAATTCACAGGGACTCTCCTCTCATCCTTTGTGTGCCTCTATTTCATCCACTGTGAACCCATCCTACCATCACCAAAAAGtttcacCATGTCTGATGTAGAGGAGGAATATGATGAACAAGCAGAGGaggaggaggaggctgcAGAGGATGCAGGAGCAGAACAGGAGGAGTATGCAGAATATCAAGaggAGACTCAGGAAGAAGAGGAGGAAAGACCACGGCCCAAGCCCATGGTTCCACAGCTTGCCCCTCCAAAGATTCCAGAGGGCGAGCGGGTGGATTTCGATGATATTCACAGAAAAAGGATGGAGAAGGACCTTTTGGAGTTGCAGACCTTAATTGACGTTCACTTCGAACAGaggaagaaagaggaggaagaacTGATCGGCCTCAAGGATAGAATTGAGCGGCGGCGGGCAGAAAGAGCAGAGCAGCAGCGTGTTagagcagagaaagaaagagacagacagacgagGATTGCGGAAGAGCGTCAGAGGAAAGAAGATGAGGAGGCTAAGAAGAGAGCAGACGACGAGgccaagaagaagaaggtttTGTCCAATATGGGGGCAaattttggtggctttttagcCAAGGCAGAGCAGAAACGAGGGAAGCGTCTTACTGGACGAGAGATCAAGAGAAAGACTCTTTCAGAGAGACGCTCTCCTCTTGGCATTGAAAATCTGCGAGAAGATGGGTTGAGACAACGAGCTCAGGAGATGTGGAACTGGATTCACCAGCTGGAGTCAGAGAAGTTTGACCTCCTGGATcaaatgaagagacagaagTATGAGATTGTTGTTCTGCTGAACAGGATTTCTCATGCCCAAAAGTTCAAAAAAGGCCATGGTAAAGGAAAGGTTGGAGGTCGCTGGAAATAAGAAAATGGGAAATAATGAAAAGACACCATGGATGCTTTTACTTTTGACTCTTCGGACAATTTTACAGCCTGTGCAAAAGAATAATATTTCTGAATGTATTCGAAACTCCTCTGATGTGTTTGGATGAGATGAATCACttctatattattttcattcgtAAGGCACTTAAGGAAAAAAGTGTCTgctacattaataaatgtaaatgaaaagttG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28871 lncRNA downstream 12436 11853748 ~ 11880959 (-) False G19383
TU28861 lncRNA downstream 13313 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA downstream 13313 11853748 ~ 11880082 (-) False G19383
TU28868 lncRNA downstream 14288 11857723 ~ 11879107 (-) False G19383
TU28877 lncRNA downstream 21489 11867007 ~ 11871906 (-) True G19385
XR_006248096.1 lncRNA upstream 68582 11968594 ~ 11975569 (-) True LOC122330904
TU28909 lncRNA upstream 68655 11968667 ~ 11975529 (-) False LOC122330904
TU28910 lncRNA upstream 68655 11968667 ~ 11973683 (-) False LOC122330904
TU28939 lncRNA upstream 119571 12019583 ~ 12023427 (-) True G19422
TU28944 lncRNA upstream 126352 12026364 ~ 12026940 (-) True G19427
XM_043234667.1 mRNA downstream 49785 11837643 ~ 11843610 (-) True baxb
XM_043233834.1 mRNA downstream 56700 11834377 ~ 11836695 (-) True LOC122338209
XM_043235538.1 mRNA downstream 139815 11750228 ~ 11753580 (-) True rnf113a
XM_043235421.1 mRNA downstream 153681 11731993 ~ 11739714 (-) True ddx42
XM_043228247.1 mRNA upstream 1117 11901129 ~ 11907793 (-) False pih1d1
XM_043228237.1 mRNA upstream 1117 11901129 ~ 11907720 (-) True pih1d1
XM_043235350.1 mRNA upstream 9763 11909775 ~ 11920767 (-) False LOC122341756
XM_043235347.1 mRNA upstream 9763 11909775 ~ 11920767 (-) False LOC122341756
XM_043235349.1 mRNA upstream 9763 11909775 ~ 11920766 (-) False LOC122341756
TU28873 other downstream 30432 11853748 ~ 11862963 (-) True G19383
TU28831 other downstream 165420 11712820 ~ 11727975 (-) False limd2
XR_006250490.1 other upstream 12990 11913002 ~ 11920767 (-) False LOC122341756
TU29176 other upstream 722771 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 1081075 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 1087338 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 1105984 13005996 ~ 13068190 (-) True G19676

Expression Profile