RNA id: XM_043235462.1


Basic Information

Item Value
RNA id XM_043235462.1
length 2186
RNA type mRNA
GC content 0.36
exon number 7
gene id LOC122341818
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11437587 ~ 11441308 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTTTTAATGACACTTATCGATTTTTCCGTTatcaaaaataattgcaaacatGCACAGGTTTGTCAGACCTCTTATGCTTCGTGATTCTAAACAGCGGTTATTGCCTACAGCGGGTCAACTTtgtacaaaaaacaaatAGCAGAAAGAACTTGGCATGTTTAACGTACGATGCATGTTATATTGTGCGATGCTTGGCAAATGTGTGATGTTTATCATGctgttGTATTCAGTGCAAGGGGATATGTTGTGCTGCCTCCCACTAacgatgaagaagaaaaagccaTGCTTCACAGGATGATGAGAGTGGATCATGCAGGAGAATATGGTGCCAACCGAATCTATGCTGGTCAGATGGCTGTTCTTGGCCGTACACAAATCAGTCCGCTCATTCAGGAAATGTGGGATCAAGAGAAGCAGCACCTGTGTAAGTTTAATGAGATACTGGCTGAGAACAGAGTGCGTCCAACCATTCTACTTCCGCTTTGGCACATCGCTGGATTTGCTCTTGGCGCTGGCTCCGCTCTTTTGGGAAAGGAAGGTGCGATGGCCTGCACTGTGGCTGTTGAGGAGAGTATCTCAGAGCACTACAACAGTCAGATCAGAACTCTAATGGAGAAAGATCCTGAGAAGTACACCGAACTGCTGCAGCTGATTAAAGAACTTCGTGATGATGAAATGGAGCACCTTGACACTGGACTGGAGCATGATGCTGAATCAGTGCCTGGATATCAGCTGATGAAAGCAATCATACAGGCAGGCTGCAAAGCTGCAATCTGTGTCTCTGAACATCTCTAAATATTTTCGTTTACTAAGTATTTTAGGTTATCCTGATATCTTGTAAATATGAATGCTACTTTTGCTATCTTTGAAgtgttacaaatattttttgctaCACCAGCTTAATTTGCAGATGGAGCCATTTTGGGCTTATTTCTCTAATATGTGTAAATACTTTGGTTCtatcaaaacattgctctgtttgtttgagcatcCCATCCATTATCTCTTTGTGTGACCAGTAGGTAAAAATTCAGAAAGAATGTTTTCCAAAAATACAATTGTTGCCATTTCAATGCAATGGCACTAGTGTTGTagaaatgacatattttatcTGTAATGACGTGTTCCTCAAAGCAGTATACAGTGGTATGCAAAGGTTTGGGCACCCTTTTGCAGAATCTGTTAACAAAAGTCTTAACAAAGTAAGAAAgattatacaaaatgcatggttttttttttatttagtattttcctAAGTAAAATACTTCACACTAAAGATGTTTACATTtagtccacaagacaaaaaaaaatattaaaatgacccCCTTAAAAGTTTGGGAACCTTTGGTtgttaatactgtgtgtgttaGCCTGGATGATGTAACTGTTTTTAgcactgttcttcagaaaaatcctccatgtcctgcagattcttcagttttcagcctggggtgaaaacttttgaacaggatgAATATGttcaaagttttctttttttgttgctttattttttttttctccacataGTACTACCCTTTGGAAGCAACAGAAGAAACTTACTTGCATGTTTCCAGAAGACAAATTAAGTACAATTTGCCTTGATCTTCAAAGTTTTCACCCCCGGCTCTTCATGCATCTTGTTttcttctggagcatcagtgaaCGTTTGAACCTTGAGTCCCTAAACTttcctcagtgtgaaaagattgatctcaaaatcatacagtcactgttggaaagggttaaaatatgcaaaaaaaactgaagaatctGCAGAACATagaggatttttctgaagaacagtttaactgttcagaataaaacaagagatttatgtcacaaaacaaaaaaacaatcgtAGGTCATCCAAGTTAACACAATCAGTATTAACAACCAAGGGTTCCCAAacttaattttttccttttttttgtcttgtggactatatgtattttacatttacattttacataaataacTTACTCAGGATAGtactcaataaaaataaaaaaaaattcacaaaagtgcccaaacttttgcattccactgtaaatattttttaaatctatgtattgtaattttacacaTGGCCAAAGTTTTTGTCTCATTCTGaggtatataaaataataatatactgtaacTTTTTATCATTCACAGTTGTGTTGCTATTAAAGTCATGTATTTTTA

Function

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
K06134 COQ7; 3-demethoxyubiquinol 3-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28478 lncRNA downstream 23282 11411985 ~ 11414305 (-) False syt17
TU28479 lncRNA downstream 23282 11413407 ~ 11414305 (-) False syt17
TU28475 lncRNA downstream 26871 11410335 ~ 11410716 (-) True G19117
TU28460 lncRNA downstream 101787 11334983 ~ 11335800 (-) True G19108
TU28853 lncRNA upstream 328464 11769722 ~ 11771648 (-) True G19375
TU28859 lncRNA upstream 402756 11844014 ~ 11844199 (-) True G19381
TU28861 lncRNA upstream 412490 11853748 ~ 11880082 (-) False G19383
TU28865 lncRNA upstream 412490 11853748 ~ 11880082 (-) False G19383
TU28871 lncRNA upstream 412490 11853748 ~ 11880959 (-) False G19383
XM_043235991.1 mRNA downstream 2526 11431783 ~ 11435061 (-) True LOC122342175
XM_043235871.1 mRNA downstream 8408 11413409 ~ 11429179 (-) True syt17
XM_043235872.1 mRNA downstream 8409 11413409 ~ 11429178 (-) False syt17
XM_043230155.1 mRNA downstream 34488 11376189 ~ 11403099 (-) False smg1
XM_043235463.1 mRNA upstream 4267 11445525 ~ 11447703 (-) True apnl
XM_043235464.1 mRNA upstream 4267 11445525 ~ 11447621 (-) False apnl
XM_043235466.1 mRNA upstream 8371 11449629 ~ 11451443 (-) True LOC122341820
XM_043234666.1 mRNA upstream 155982 11597240 ~ 11602381 (-) True moto
XM_043235527.1 mRNA upstream 192163 11633421 ~ 11640057 (-) True ccdc47
XR_006248663.1 other downstream 373004 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250542.1 other downstream 657391 10780102 ~ 10780196 (-) True LOC122342196
XR_006250541.1 other downstream 658352 10779101 ~ 10779235 (-) True LOC122342195
XR_006250486.1 other downstream 1041246 10394314 ~ 10396341 (-) True eef2kmt
TU27537 other downstream 1974682 9426572 ~ 9462905 (-) True G18433
XR_006250462.1 other upstream 253014 11694272 ~ 11714719 (-) False map3k3
TU28831 other upstream 271562 11712820 ~ 11727975 (-) False limd2
TU28829 other upstream 274464 11715722 ~ 11727975 (-) False limd2
TU28830 other upstream 274464 11715722 ~ 11727975 (-) False limd2
TU28832 other upstream 274464 11715722 ~ 11727975 (-) False limd2

Expression Profile