RNA id: XR_006248071.1


Basic Information

Item Value
RNA id XR_006248071.1
length 425
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC122330723
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1279263 ~ 1281171 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACATAGTGTGCACCACGTTTATGGCAGGATTATCGCACCGAATTATTCACAATCATATCATTTACTGCTTTATGTTTTCCTTAGAAAACCATTGAAAGCTGGCATTTTCTTAATTTGAATAAGCCTACTGAAAACGGGAATTTCTGCAGCCCAGAAGCGAAAATATCCGGCACCGCCCTTCTTTTTCAGTCCTTCACTTGTTTTCATTATATGACACTGAACTGATTCCAGCGCAGTGAGAAAAAGCCTGTACTCAGGTCTGTACATCTGTACACAAGGCTCCATTATTTCACTTATCTCCAAGTACTTCAGGTTTTCTGTTAAGAAGCTCCAGTTCTGAATCATGCCGTGCACACAAAGGTTGGTGGCCAACACACAGGGAAtttctggtaaaaaaaataaggTGCCAAATAATCCACAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23674 lncRNA upstream 38216 1240346 ~ 1241047 (+) True G15929
TU23671 lncRNA upstream 63658 1215316 ~ 1215605 (+) True G15927
TU23669 lncRNA upstream 65635 1213325 ~ 1213628 (+) True G15925
TU23652 lncRNA upstream 126035 1152825 ~ 1153228 (+) True G15911
TU23622 lncRNA upstream 147788 1129892 ~ 1131475 (+) True G15887
XR_006248053.1 lncRNA downstream 102077 1383248 ~ 1384894 (+) False LOC122330682
XR_006248052.1 lncRNA downstream 102077 1383248 ~ 1384764 (+) True LOC122330682
TU23726 lncRNA downstream 133044 1414215 ~ 1415199 (+) True G15967
TU23731 lncRNA downstream 160088 1441259 ~ 1441742 (+) True G15972
TU23696 lncRNA downstream 204400 1485571 ~ 1490779 (+) True G15944
XM_043226420.1 mRNA upstream 44359 1230001 ~ 1234904 (+) True LOC122329817
XM_043226863.1 mRNA upstream 54346 1217521 ~ 1224917 (+) True sox10
XM_043226742.1 mRNA upstream 81225 1188018 ~ 1198038 (+) True kcnj4
XM_043227216.1 mRNA upstream 99922 1176232 ~ 1179341 (+) False LOC122330304
XM_043230100.1 mRNA downstream 91361 1372532 ~ 1374290 (+) True LOC122332730
XM_043226714.1 mRNA downstream 95278 1376449 ~ 1380026 (+) False LOC122329966
XM_043226706.1 mRNA downstream 95295 1376466 ~ 1380026 (+) False LOC122329966
XM_043226711.1 mRNA downstream 95311 1376482 ~ 1380026 (+) True LOC122329966
XM_043227278.1 mRNA downstream 106313 1387484 ~ 1389699 (+) True LOC122330340
TU23529 other upstream 230003 1048003 ~ 1049260 (+) False LOC122330066
TU23504 other upstream 269960 1005995 ~ 1009303 (+) False LOC122330135
XR_006248020.1 other upstream 510291 754431 ~ 768972 (+) False LOC122330463
TU23155 other upstream 643654 625365 ~ 635609 (+) False LOC122330407
TU23138 other upstream 722182 553698 ~ 557081 (+) True G15563
TU23688 other downstream 9798 1290969 ~ 1291564 (+) True G15939
TU23709 other downstream 109568 1390739 ~ 1392850 (+) True G15955
XR_006247969.1 other downstream 114676 1395847 ~ 1402168 (+) False LOC122330032
TU23776 other downstream 278216 1559387 ~ 1649494 (+) False G16003
TU23773 other downstream 334537 1615708 ~ 1646532 (+) False G16003

Expression Profile