RNA id: TU48571


Basic Information

Item Value
RNA id TU48571
length 1063
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G32992
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3505648 ~ 3506710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGGAagttgtttcttcatcaggacAGAGTTCTGTTTGCTCATCACTGGATGCTCTGCAGTCAGGGGATTCGGTCCATCCGTCTTCAGGCCATCGATTCTAGCTAAAACACGACTTCTCTATCCATCATATGGGAAAAAAGTCATCCCGTCtcaatcaggagagaaatctgcacgcGTCAAATACAAGTGGAAGCGGTCCCAAACAGGAGACGGACTTCTTCCCTTACGATGCGTTATGTCTGATGTTTTGGCTAGTTTCAAGTTAGATTTAGTTTCATGTAAAGCCGCAGCTTCATTTAGATTTCgaggaaatgcataaaaatcGTTTTTCTGATGGTCGTCCTTGTGGTTTTCGCTCTTCTGGACACACCGTTGCTTTATTTTGGACGTTCTGTCATTTTCCTGACACACTgatgtgttctctctctctccgcttccTCTGTAAATGACAGGCCATTCTTTTATTCTCCAGTTCAAAAACTCAATTCCTCTTCAaagcaagcttttttttctgcattctgAAAGATTTATTGTTCACCTTTACTGCCGGCATgttcattttaacaatttatttaggAAATAGTCCTTGGTGTGTATAAAACATCTTGCATTATTTCCAGACAGAAATGTTCTCCCTTTCCATCTTGTTGCTTGTGGTTAAATTGTTCTTAACATCATGCAAGTAAATGATCGTCTTTGTTGTCGTAACATGCAAATCATCATTGATACGGTGTTTGTTGTAATTCTTGATCcaagagaaaaatatttttaacctttATAACCTCtgcaatattattaattaattattttatttaactgtgaTGTTTCTGGTATAAAGCCGTATTACGCACGATTCTTCAAAGTAATCTATCAGAAATACTTCTTAAATGCTCAAATACTTTAAGCTTCAAATCAAAATTGTGCTTCATCTTATAGCTTGGTTCGTGGCTTATAGCTCTTGAACGAAGACTTTAAAAAACTACTTCTGGGATCAAGGCCGCTGAAAAAAAGTGTCCTGGCgcttttgcactttattttataatatatatatgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48528 lncRNA upstream 116161 3388301 ~ 3389487 (+) True G32956
TU48527 lncRNA upstream 117920 3387494 ~ 3387728 (+) True G32955
TU48507 lncRNA upstream 162718 3340604 ~ 3342930 (+) False tbx1
TU48504 lncRNA upstream 166595 3338811 ~ 3339053 (+) False tbx1
TU48499 lncRNA upstream 212090 3293274 ~ 3293558 (+) True G32934
TU48612 lncRNA downstream 101871 3608581 ~ 4098339 (+) False G33015
XR_006251072.1 lncRNA downstream 144699 3651409 ~ 3652844 (+) True LOC122346010
TU48630 lncRNA downstream 153157 3659867 ~ 3662929 (+) True G33018
XR_006250998.1 lncRNA downstream 749468 4256178 ~ 4282937 (+) True LOC122345412
TU48695 lncRNA downstream 749651 4256361 ~ 4257171 (+) False LOC122345412
XM_043238405.1 mRNA upstream 445 3497249 ~ 3505203 (+) False suds3
XM_043238404.1 mRNA upstream 445 3497252 ~ 3505203 (+) True suds3
XM_043238407.1 mRNA upstream 83504 3417904 ~ 3422144 (+) True pebp1
XM_043239954.1 mRNA upstream 162578 3328800 ~ 3343070 (+) True tbx1
XM_043239955.1 mRNA upstream 162578 3328800 ~ 3343070 (+) False tbx1
XM_043239575.1 mRNA downstream 103762 3610472 ~ 3619055 (+) False hspb8
XM_043239573.1 mRNA downstream 103768 3610478 ~ 3619055 (+) True hspb8
XM_043239570.1 mRNA downstream 116432 3623142 ~ 3650695 (+) True LOC122345442
XM_043239571.1 mRNA downstream 116913 3623623 ~ 3650703 (+) False LOC122345442
XM_043239947.1 mRNA downstream 170878 3677588 ~ 3747908 (+) False znrf3
TU48185 other upstream 1237454 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 1487189 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 1600360 1901458 ~ 1905288 (+) False LOC122346050
TU48056 other upstream 1662635 1835148 ~ 1843013 (+) True G32620
TU48046 other upstream 1679534 1822654 ~ 1826114 (+) True G32611
TU48610 other downstream 98476 3605186 ~ 4144396 (+) False G33015
TU48613 other downstream 98476 3605186 ~ 4144396 (+) True G33015
TU48849 other downstream 1115797 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 2097623 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 2097623 5604333 ~ 5649885 (+) True G33355

Expression Profile