RNA id: XR_006250998.1


Basic Information

Item Value
RNA id XR_006250998.1
length 1325
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id LOC122345412
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4256178 ~ 4282937 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgtctttttatattttgtatagtCATTTTGCAATTTGTTTAAGCATGTAGATATTGCACAAAGCATATTTTGTTGTCTAATGCAATGacgtttatacatttaaagggacagtagaCCCAAAAATGTCAACTTTTTCTCACCTGCCCTAAAcctgaatgtattttttctacCTCAGAtcccaaaataaagtgttttgaagaatgttggtagcTAAATATGTTCAGTTCCCTTTGACTTTGGTTGTATGGACCGAAGACGATTGGAGTCGATAGGAACCGGAACCGTTTGGTTagcaacattcttcaaaatatcttcttttgtgttcaagcAGGAGAAGGTAATACATACacgtttggaaagacatgagGGTACACCTTTCTGGATAGTTATTTTTTGATGTGTCGATGAAAAACGAGTCATTCTGCCCCGGTGCACATGCTCTCTGTCTACATCCACCTCCCACCTTCTCTCCTGAAGGACAGAACACGTAAATCTCAGTGGGATGGTGGGAAGTATCGTCTGGCCCATCCTAAGGAGGTCATTCAGCCAGGAGGAATCCACCGAGAGTGCAAGCGTttggctttttctttcttttgaaaggGAGAGAGAGTTTATGCCAGCCGGAACAATTGAGACGTTTGATTCCCGACAGTTTTATGATGGCGTCTGGTTCgcggtgtgagtgtgtgcgacCGAGAGGCGATAAAAACGCACGCCCTCGTGTTTACCAAGCTGGACGCTTCGGAAAAGCACCGATGACGCCGAACGCTCACAAAAGCTGACACCTGTTTTCACAGACGTTGCCTCATCCTGTCACATCAGTTCGAGAAACTTTTAGCATCACATTTATGGATTCCCTAAACACTCCCTGCCCTCAGATCTCAGGTTTGGCAGCATCTGGCTGGCTTTCCATATTGCGTTTGAGCGCCGAGATGTGCGTGACATGCTTAAGCTGTCTTCAAACGCAGCTCTTCCAGATCTGAACACAATTACCAGACAGCCGCGATTACGTGTCATGTCAAACACAGGCGAGTGATTAAGAGAACATATTCTTTGTTTTCACCCGAGACCGAGAGAACATATTTCATGTGAAGGATTCTTTTCATTCGGTAAATGAGCCAAATTAATTCGTATCCCTGAATGGCCCCGAACGCACGTAGGGTTGAGCGGGGATAAAGATCTAAGGtttaatatcaaaacaaatatgCGATGATGCAAATCGGATGTTAAACGAATCGTGAGACATTCGGGGGAGTGGATATGAGCGTATCTCCGAGGGAAACTGAACTCAATTCATCGTGCTTCTGAATAATGCAtgctttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48612 lncRNA upstream 157839 3608581 ~ 4098339 (+) False G33015
TU48630 lncRNA upstream 593249 3659867 ~ 3662929 (+) True G33018
XR_006251072.1 lncRNA upstream 603334 3651409 ~ 3652844 (+) True LOC122346010
TU48571 lncRNA upstream 749468 3505648 ~ 3506710 (+) True G32992
TU48528 lncRNA upstream 866691 3388301 ~ 3389487 (+) True G32956
TU48703 lncRNA downstream 45261 4328198 ~ 4329596 (+) True G33077
TU48705 lncRNA downstream 53435 4336372 ~ 4337998 (+) True G33079
TU48842 lncRNA downstream 309659 4592596 ~ 4592852 (+) True G33167
TU48870 lncRNA downstream 361268 4644205 ~ 4727838 (+) False fbrsl1
TU48875 lncRNA downstream 620191 4903128 ~ 4903374 (+) True G33182
XM_043239519.1 mRNA upstream 315203 3903978 ~ 3940975 (+) True LOC122345408
XM_043239947.1 mRNA upstream 508270 3677588 ~ 3747908 (+) False znrf3
XM_043239949.1 mRNA upstream 508270 3711603 ~ 3747908 (+) False znrf3
XM_043239948.1 mRNA upstream 508270 3714106 ~ 3747908 (+) True znrf3
XM_043239571.1 mRNA upstream 605475 3623623 ~ 3650703 (+) False LOC122345442
XM_043238659.1 mRNA downstream 92866 4375803 ~ 4409270 (+) True LOC122344976
XM_043238878.1 mRNA downstream 361164 4644101 ~ 4902403 (+) False fbrsl1
XM_043238877.1 mRNA downstream 361165 4644102 ~ 4902403 (+) True fbrsl1
XM_043238879.1 mRNA downstream 361165 4644102 ~ 4902403 (+) False fbrsl1
XM_043238880.1 mRNA downstream 361165 4644102 ~ 4902403 (+) False fbrsl1
TU48610 other upstream 111782 3605186 ~ 4144396 (+) False G33015
TU48613 other upstream 111782 3605186 ~ 4144396 (+) True G33015
TU48185 other upstream 1987984 2265145 ~ 2268194 (+) True G32706
TU48087 other upstream 2237719 2010411 ~ 2018459 (+) False LOC122345711
TU48080 other upstream 2350890 1901458 ~ 1905288 (+) False LOC122346050
TU48849 other downstream 339570 4622507 ~ 4623060 (+) True G33174
TU49128 other downstream 1321396 5604333 ~ 5649885 (+) False G33355
TU49131 other downstream 1321396 5604333 ~ 5649885 (+) True G33355
XR_006250955.1 other downstream 1342330 5625267 ~ 5647425 (+) False myo1ha
XR_006251052.1 other downstream 1676898 5959835 ~ 5978584 (+) False tnpo1

Expression Profile