RNA id: XM_043238333.1


Basic Information

Item Value
RNA id XM_043238333.1
length 4278
RNA type mRNA
GC content 0.48
exon number 12
gene id kank1b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6978548 ~ 6988772 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGACCGCCGCACACCTGCCGTAGTGCGTCATGACGTAAGCAGCGACTCGTCCGTACGCGTGTCTACAGAGCGGCGCGATAAAGTTACTTCAGGACCGGCTGCTCACCCTAAGCTTTCCAAACCTGCAGCACCGTTTCAAGACGAACGACAGCGTTCAGCTGTGAACGCAGAAGAAACGCTGAGCGGTGTTCATCTCTGCGTTCGCACAAGCTGAGACGTTTAACAGCGATATTGTCAGTTGCCATGActcaagaaacacattttcatcaACAACaCTGGAGTGAGATCCCTGTCGACTCTTTTCAGAGTAGCCCGTTCGGCATCGATACACCATATGGGTACCAGCTTGACTTAGACTTTGTTAAATACGTGGATGATCTCGAGCGAAGTGACACCATTCGCCGACTGCATTTTAACAAGAGGCCAGGGGTGGCAAATGCTGCCTCTGAGCCGCAACGCATCATAAACACCACACACTGGACTTCCTCAGAGTCCTTGTCCTCGGTGAGCAGTGATGAAGCCAAGAAAACCTCTCcctcttcatcctcttcctcttcttctgtcAACAAAGGAAGACCGCCACTTCCCCATTCCAAACCTAAATCTTCCAATCAGAGACCAGAGGTCCCTCAAGACCTAGCTACCTCTCAGAGGGATGAACAAGGGACACGTACCCAAACCACACAACTTCCAACCCCGACTAAATCAAATTCTCTAGTTGACAAGACTCTAATGGAAACATGCAGGCGCCTGGAACATGAGAAAGGCTCATTGCAGCAAGGACCTCCAGAACCACAGCCGCGGCGTAGACTGGCCAGTTTTGGCGGTCTTGGCTCTACCGGTACCCTGTCTCCATACACAAGCTGGAGTGCCCTAAATCAAGGTGCTAAGATGACAGTCTTAGACCAGCCCAGGCAAGGTACCTTGTTGGGGAGCGGCATGAAAATCAGCCCCTCAAGCTCAGGCCGGGCATCTCCAGTGAGCGGTGTGAGTCCACTCCACCTCCAGATGGTCAGGGATCAGATGGCAGCTGCTTTACGAAGATTGAAGGACCTGGAAGAGCAAGTGAAGGCCATTCCTGTCCTACAGGTGAAGATTGCTGTTTTGCAGGAAGAAAAGAGACAACTGGCTGCTTTGGTCAAGAGCCAAGATGAAGGTCAAAGATCTAGCCCTGGCATTGACAAAAATGTACAAGAATTGAGCAACAAACCAGCGATGGAGGGTTGGGAGCACAGCACCATCTCTGGTCTGACGGATTTTCAACAGCTCAGTGTTGAAATGCAGCTGCTTGAACGGAAGATCCAAGATGCACGTCTTGAATCCTCAGCTTTCAAGACGAAGGATCGAAAGTCAGTCGGTGTTGGAGATGACAGGCGCATCGATGAAATCATTGTCATTCATCAACACAAAGCAAACTTCAGTAAGGATGTTGCTGTCGATGCCAAACTTGAGACCAGGTCAGTGGCTGTCGGCGTGACTATGCCCGACGTGGAATCTGAAGTAGAAACAGAGTTGCAGCAGCAAACCATCCAGCATTTAAGTGACCGGGTTCAGACATTGGAGGCTGAGCTTAAAGAAGCAATGCTCAAGGCAGAAATGGGTAGGCTGAGGAGTGAACTTCGGGAAGCAGAAGCGAGAAACCGCGCTGACAAGAGTTCCTCCACATACCCTCAGGTAAACTGCGCCGCCACCCAGACAGAGTTGCAAACTCGCGCTCTTGGGATTGGAAAACACGACAACCTTGTGCATTCTGCTGCTGGAGGAGGACTAGAGCGGATTTCCATTGGTGTTGGAGTTTCATGCAAACCCGAGGTGAAGGTTGCGTCGTCTGGCCCAGATACGCCTATGGAAGAGTGGGAAGTGCGCAAAAGAGTAGAGCAGAAAGACCAGTGTGTCGGAAGTAAGAGTGTGGCAACGCACAGTCAAGGTGTTGGGACgacagtgtctgtgtgtgatgcTGCCACAATTACCTCGGAGAACAAAAAGAGCGTTTCTTGCCAAACGGTTGGCTGTGGTGACGTGGATGTCAGATCGGTTAAATCACTAAATTCCCAAGGGACGCTCACTGACCCAGTTCGAAGTGTTGATTTGGGTGTGATGGCAATCCCTCAGACAATGTCTCAGCGTACCAGCACAGCCTTTTGCACCGTCTCACGCAGCACCAGCACTTTGCAAGCCTGTATCTCTGAAGCCAGCACCAACACAAAGCACACACTGACCAGGGAAAGACATACCAACACAGCACATGCAGTGACCCGATCGCTGGCGGTTGGAGATGGGAAGGTTTGCGACCGCACGGCTGCTGTTCAGATGCGCTCTGTTGGAACAACTGCGTGGTTAGATAGAGGCACAAGTACCCTTGCTGTTCCTAGTGTTGTGACACGTGACGTAGGTGTTGGAATGGCAAATATCAATGAGAATATCCTCATCGGACTCCATACGCGCAACATTGCATGCGGTCCATCCCGTCTGCCTGATCCGGTCAAGACGCGTAGCATTGGCGTAGAAGTGGGAGACGGGAGAGTACGTGACTCGGAGGGCCAAATGTTTGTGCAGACTGAGCCTGGACTTGACCATTATATAGATCGCATGCAGAAATTACTCAAAGAACAACAGGACCTATTAACTGACAGTCACCCTGGGACGAAACATGAGGCCTTTCTACAGTCCCACGGTGTTTTAGATAAACAAGTTGGAGGCATTGCTCAAAACCAGACATCAATTGAAACTTCAAAAGTTAAAGAAAAGAATCAAATGGAGTTGCAGATGTCCGCTGCTCTTCAtgGCTCACCCAGTGATGATCGTTGTCTCAGGTCCATCATGAAAAGGAAAAGCACCAACATAAAGGCCATGGACAGTATGAACCCCAAGCCTCCCTCACATCGaggtacAGTGGACCTGTCTGAGGGTGCTGATTCTGAGGATGAAGAGCAGAAAATAAGAGATAAGATGGAGAAAGAGGGGAGTACCAAAGATAAAGGGAAGATTCCCAAGAGAAAAGAAAGATATAAATTTAGTGAGAGGATGCTTTCTGCCTGCCACACTCTGGAGGTTCACCTCAACGGTAGCAAGGTTATATCCAACAGAGAACTGCGTTCGTGTCTGAGCACAGTGCAGCAGGAGTGGTTCTGTGTGTCCAGTCAGAAGAGGGCATGCCCACAGATCGTGGAGGACTTCCTCTTTGCTTGTCGCCATGTCTCGCCCGATGTCCTGTGCTATGTCGCCAACATGGCGGACCAAAATGGCAACACAGCCCTCCACTACAGTGTGTCACACTCTAATTTCAGCATAGTAAAGATTCTGCTTGCTGCAGGAGTATGTAATGTAGATCATCAGAATAAGGCCGGTTATACTCCCATAATGCTTGCCTCTCTGGCTGCTGTGGAAACCAAAGAGGACATGATGGTGGTTCAAGAACTCTTCAGCAGAGGAGATGTTAATGCCAAGGCCAGCCAGGCTGGTCAGACAGCTCTCATGCTAGCGGTCAGTCATGGGCGTATAGACATGGTCAGGGCTCTGCTGGCTGCTGGGGCAGAGGTCAACATCCAGGATGATGAGGGGTCAACTGCTCTGATGTGTGCTGGTGAACACGGCCATGCTGATATTGTCAAACTCTTACTGGCCCAGCCAGGCTGTGATTCCACGCTGACTGACAATGACGAAAGCACTGCTCTGTCCATTGCTCTGGAGGCTGGACACAAAGATATCGCTATGCTTCTCTATGCCCATGTCAACTACTCAAAGGGCCAACCTAGGGGATCCCCTCGAAGCAAGACTCCACCTGTTCCACGCATAAGCTCTTCTGATTGATACGAGGTTTTCCCATGCTCTCTTCATCCCCCCCCTGAGCAACCTGCTCGATCATATGACTTGAAATGAATGCGACAGGTTATGTTTTCCAACAGGTGTAATATTAAAGAGAGCAGTATATTCAAAAGCGCAGTGCACTGTTGGTATTACAAgctgcatcatttattttcttctatacTGACAGTTATGTTTCCcacatataaaaacacagtaataaagACCTACTATAACAGGTAGCTGCATGTGAAaagttttatgtattaattttaggtgatatatgaatttatatgcatttgggggattatatatctttttttttaccatttttaaagcTTGCTGCAATTTCTTGTATATTTTATCAAGTATTCACTTCCAAGATATGATATCTAGATTTTAATGtcataataaaaactaaagaaatgtaaatgtcatgttgatatctaaataaatatgtgattGCATCACCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49676 lncRNA upstream 47770 6929647 ~ 6930785 (+) True G33712
TU49666 lncRNA upstream 56916 6920745 ~ 6921639 (+) True G33708
TU49635 lncRNA upstream 281913 6617276 ~ 6696642 (+) False dab2ipb
TU49605 lncRNA upstream 484025 6491552 ~ 6494530 (+) False G33665
TU49863 lncRNA downstream 145522 7134294 ~ 7134884 (+) True G33844
TU49870 lncRNA downstream 146135 7134907 ~ 7135122 (+) True G33850
TU49872 lncRNA downstream 156288 7145060 ~ 7146006 (+) True G33852
TU49873 lncRNA downstream 158263 7147035 ~ 7147616 (+) True G33853
TU49878 lncRNA downstream 177836 7166608 ~ 7168142 (+) True G33857
XM_043239641.1 mRNA upstream 880 6965149 ~ 6977675 (+) True prkaa1
XM_043239642.1 mRNA upstream 14058 6963937 ~ 6964497 (+) True ifitm1
XM_043239745.1 mRNA upstream 16166 6957273 ~ 6962389 (+) False kyat1
XM_043238228.1 mRNA downstream 3450 6992222 ~ 6999388 (+) False LOC122344685
XM_043238229.1 mRNA downstream 3812 6992584 ~ 6999388 (+) True LOC122344685
XM_043238232.1 mRNA downstream 3816 6992588 ~ 6999388 (+) False LOC122344685
XM_043238231.1 mRNA downstream 3817 6992589 ~ 6999388 (+) False LOC122344685
XM_043238230.1 mRNA downstream 3864 6992636 ~ 6999388 (+) False LOC122344685
XR_006251122.1 other upstream 26826 6951658 ~ 6951729 (+) True LOC122346227
XR_006251121.1 other upstream 27189 6951290 ~ 6951366 (+) True LOC122346226
XR_006251114.1 other upstream 27797 6950686 ~ 6950758 (+) True LOC122346218
XR_006251115.1 other upstream 28274 6950211 ~ 6950281 (+) True LOC122346219
XR_006251123.1 other upstream 28590 6949899 ~ 6949965 (+) True LOC122346228
XR_006251030.1 other downstream 297818 7286590 ~ 7299811 (+) False gpr107
TU49900 other downstream 349696 7338468 ~ 7344078 (+) True G33878
TU49901 other downstream 349696 7338468 ~ 7344078 (+) False G33878
TU49954 other downstream 385134 7373906 ~ 7449497 (+) False LOC122345182
TU49933 other downstream 431368 7420140 ~ 7440775 (+) False G33891

Expression Profile