RNA id: TU49936


Basic Information

Item Value
RNA id TU49936
length 1292
lncRNA type inter_gene
GC content 0.49
exon number 8
gene id G33891
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7420140 ~ 7520241 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTTGTCAAAGTTCCTCTGCTTCTTGTCAAGGTTGGCAGtacctTGTCAAAGTTCCTCTGCTTCTTGTCAAGGTTGGCAGCCAAAGCATTGGCTCTCTCCACATCAATCATGAGGTCCTCCACCTCACCCTGGAGTCTCTGTTTGGTCTTCTCCAGAGAGGCACATTTGGAGTTCACAGCCTCAATTTGTTCCTCTGCCTCTTGGAGACGCTGAGCCAACTTCTTGGCCTCTTCAAGTTCTTCAGTGCGCTGGATGGCATCAGTTTCATATTTGCTTCTCCACTGAGCAACTTCACTGTTGGCCTTTGACATTCCTCTCTGCAGCTCAGCCTTGGCCTCCTGCTCTTCCTCAAACTGCTCACGGAGCAGGTCGCAGTCATGACGGGCTGATTGCACAGCATGGGCCAATGCGTTCTTAGCCTAACCTCCTCTTCAATCTGCCTCTTAAGCTCCTCAATTTGCTGAGTGAAAGCTTGTTTGCCTCTGGTGAGCTGAGAAACCAGAGCCTCCTTCTCCTCCAGCTGACGGCCAAgttACCATTTTCAGTTTGAAGCCTTGCTCTTTGAGCACTGAGGTCATTTATCTGGCGAAGGTTCTCGTCATTCTTAGACTTTATTTCACTAAGTTGGTCCTCAAGTGTGCGGCACATCTTCTCAAGATTGCCCCTTTGCTTTGGCAACAGCCTCCATGTTGCTGGAAAGATCATCAATCTCCATTTTGTATTCACTCTTCTCTTTCTCAAGCTTCTGCTTGACACGCTGGAGGTTGTCGATCTGCTCTCCCAGCTCGGCCACACTGTCTGCCTGCTTCTTACGGAGGGCAGCAGCGGTAGCTTCATGCTGGAGGGTGGACTCTTCAAGATCACGACGCAGCTTCTGGAATTCAGCTTCACGCTTCTTATTCATCTCGATCTGAGCAGCAGTGGCTCCTCCAGCCTCCTCAAGCCTCTCACTGATCTCCTCAAGTTCCCTGGAGAGATCAGCTCTCTGCTTCTCAACCTTGGCACGAGCAGCACGCTCAGCCTCAATCTCTTCCTCCAGTTCCTCAATGCGAGCCTACACTCCTTGATCTTCTTCTGGAGTTGAGCACCCAGAGATTGTTCATCTTCAATCTTGCTTAGCAGCTGACTTGTTTCAAAGTCTTTtttttaattttctccTCAGATTGTTGCTTGTCATTCTCCAGGTCCATGATGGACTCTTGCGCTAATTTCAGGTCTCCTTCAAGCTTTCTCTTTGCTCTCTCAAGATCCATGCGGAGCTTCTTTTCTTGTTCAAGGGAACCCTCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49903 lncRNA upstream 77726 7343209 ~ 7344078 (+) False G33878
TU49919 lncRNA upstream 88026 7333469 ~ 7333778 (+) True G33888
TU49918 lncRNA upstream 92185 7329347 ~ 7329619 (+) True G33887
XR_006250915.1 lncRNA upstream 181094 7222397 ~ 7240710 (+) True LOC122344649
TU49965 lncRNA downstream 4551 7447776 ~ 7488963 (+) True G33899
TU49970 lncRNA downstream 21146 7464371 ~ 7482987 (+) True G33903
TU50133 lncRNA downstream 153060 7596285 ~ 7597520 (+) False tmem119b
TU50186 lncRNA downstream 197151 7640376 ~ 7640732 (+) True G34064
TU50187 lncRNA downstream 229695 7672920 ~ 7674636 (+) False dpm2
XM_043239061.1 mRNA upstream 23069 7373608 ~ 7398735 (+) False LOC122345182
XM_043239060.1 mRNA upstream 23069 7388474 ~ 7398735 (+) False LOC122345182
XM_043239062.1 mRNA upstream 37647 7373608 ~ 7384157 (+) True LOC122345182
XM_043239058.1 mRNA upstream 51436 7360279 ~ 7370368 (+) True LOC122345181
XM_043239900.1 mRNA downstream 27970 7471195 ~ 7473590 (+) True m17
XM_043239902.1 mRNA downstream 50989 7494214 ~ 7501569 (+) True cabp7b
XM_043239908.1 mRNA downstream 62198 7505423 ~ 7511508 (+) True arpc5lb
XM_043239863.1 mRNA downstream 115715 7558940 ~ 7567263 (+) True svopb
XM_043239851.1 mRNA downstream 124548 7567773 ~ 7578212 (+) True ssh1b
TU49900 other upstream 77726 7338468 ~ 7344078 (+) True G33878
TU49901 other upstream 77726 7338468 ~ 7344078 (+) False G33878
XR_006251030.1 other upstream 121993 7286590 ~ 7299811 (+) False gpr107
TU49701 other upstream 439811 6978548 ~ 6981993 (+) False kank1b
XR_006251122.1 other upstream 470075 6951658 ~ 6951729 (+) True LOC122346227
XR_006251015.1 other downstream 115715 7558940 ~ 7566576 (+) False svopb
TU50226 other downstream 310849 7754074 ~ 7797968 (+) True p2rx1
XR_006250944.1 other downstream 558353 8001578 ~ 8010599 (+) False spns3
XR_006251032.1 other downstream 846495 8289720 ~ 8304151 (+) False snx19a
TU50789 other downstream 1424288 8867513 ~ 8871518 (+) False man1b1b

Expression Profile