RNA id: TU50207


Basic Information

Item Value
RNA id TU50207
length 876
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G34071
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7710303 ~ 7711178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGGTTATAAATGGAAAGTATAATGGTCTACTGGTATGTGATTCTAATGGTGGAATGTTAAAGTCTATTGGAAAAGTGGCCAAAACACACTACAAGAAggaattttgtaatggtttttctggtaaaaaaaaccttatagTTCACAATGGCATTTTATTGGCAACTATTTGAatttctgtaatgttttttttttagcagggaaGTGCTGAACATAGAGACAAACAAAGCATTCAGAAACATTTAGACAACAAAACATATGTAAAGTAACAATAAGAtcctaaattaaaattattcagaGTAAAAATAAGCTTTcagcttcattttaaaaattgtaattgatGGTGCGAGATGGATGTGTAGTGGCAGTTGATTCCAAAGACGGGGGAGCAATCAAAAAAGCCCTTATTCttagtttttaaattgtggGTGAGGTACAACTAAAAGCCTTATCAACAAATCTAAGAGATCTAGAGGATGAACAAGTAAACATTAGAAGACATTTAAGATCCAATGGGGCTTGACCATAagagcttaaaaaaacaaacaaacaacaatctTGAAATGAACTCTAAACTGAACTGGAAGCCAATGAAATGAAGCTAAAATTGGTGTAATGTAATCGGTTTCCTTTTGCCCTAGTGCCCACTCACTACTACGGGCTAGTTGGATATCTCCGCCATCTTGGAATTTGGTCGAGCGAGTGTGTGCATAAATACTTCCGGTTGTGCTAAAAGCCAGTGCAGAGAACCGGAATCCAAACATTACCTTCTATATCCgtttaaaatatctataatatcacttcaattgcaataaaatatctACATCGCTATTAGTACTATACTATGAATGTTAACATTTGAAACGCACATATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50187 lncRNA upstream 35667 7672920 ~ 7674636 (+) False dpm2
TU50190 lncRNA upstream 35667 7672920 ~ 7674636 (+) True dpm2
TU50186 lncRNA upstream 69571 7640376 ~ 7640732 (+) True G34064
TU50133 lncRNA upstream 112783 7596285 ~ 7597520 (+) False tmem119b
TU49965 lncRNA upstream 221340 7447776 ~ 7488963 (+) True G33899
XR_006251017.1 lncRNA downstream 2436 7713614 ~ 7725823 (+) True LOC122345618
TU50209 lncRNA downstream 4196 7715374 ~ 7724190 (+) False LOC122345618
TU50212 lncRNA downstream 6795 7717973 ~ 7780924 (+) True G34075
TU50263 lncRNA downstream 153989 7865167 ~ 7934699 (+) True G34104
XR_006250969.1 lncRNA downstream 200914 7912092 ~ 7931348 (+) True LOC122345061
XM_043239876.1 mRNA upstream 7132 7683732 ~ 7703171 (+) False sh3glb2b
XM_043239878.1 mRNA upstream 7132 7683733 ~ 7703171 (+) False sh3glb2b
XM_043239875.1 mRNA upstream 7132 7683734 ~ 7703171 (+) True sh3glb2b
XM_043239877.1 mRNA upstream 7132 7683735 ~ 7703171 (+) False sh3glb2b
XM_043239882.1 mRNA upstream 7132 7683735 ~ 7703171 (+) False sh3glb2b
XM_043239886.1 mRNA downstream 71338 7782516 ~ 7792838 (+) False p2rx1
XM_043239883.1 mRNA downstream 71339 7782517 ~ 7794754 (+) False p2rx1
XM_043239885.1 mRNA downstream 71339 7782517 ~ 7794754 (+) False p2rx1
XM_043239884.1 mRNA downstream 71340 7782518 ~ 7794754 (+) False p2rx1
XM_043238515.1 mRNA downstream 263905 7975083 ~ 7976638 (+) True LOC122344894
XR_006251015.1 other upstream 143727 7558940 ~ 7566576 (+) False svopb
TU49922 other upstream 264087 7425705 ~ 7446216 (+) False G33890
TU49927 other upstream 264087 7426257 ~ 7446216 (+) False G33890
TU49925 other upstream 264087 7426981 ~ 7446216 (+) False G33890
TU49933 other upstream 269528 7420140 ~ 7440775 (+) False G33891
TU50226 other downstream 42896 7754074 ~ 7797968 (+) True p2rx1
XR_006250944.1 other downstream 290400 8001578 ~ 8010599 (+) False spns3
XR_006251032.1 other downstream 578542 8289720 ~ 8304151 (+) False snx19a
TU50789 other downstream 1156335 8867513 ~ 8871518 (+) False man1b1b
TU51316 other downstream 2085212 9796390 ~ 9799358 (+) True si:ch211-102c2.4