RNA id: TU50209


Basic Information

Item Value
RNA id TU50209
length 397
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC122345618
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7713614 ~ 7725823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgacCCTCCAGGACCGAGCTCGGACAGCCCTGCAAATTGTGCgagttttgttgtgaaaacctggcaaccctttACGTCGAGCAGAACTCACAAGTTAAATTTCCAAAAGAGGGCAGTTTCCCAGATGATATCAAAGAATGCTTCGCATCACCCCTCTGGATCACATTCTGCCCATATTAGAGTTTAGGCATTTCTAAAAAACTCTCATCGGCGTCGGCTGCTGCAGGGTTTGTGGGATTGAGGGATGATCTCGACAAGAACCTCGACATCTCATGTCACGGTAACGGTATTTCCAGatatttacTTATTTCCAGAGGATGCTTTTTATTTGCTTCAAAGGCaaacatgaatgaaatgaaagcatgtgcttagtatgaaaaaaaaataaaaaagtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50207 lncRNA upstream 4196 7710303 ~ 7711178 (+) True G34071
TU50187 lncRNA upstream 40738 7672920 ~ 7674636 (+) False dpm2
TU50190 lncRNA upstream 40738 7672920 ~ 7674636 (+) True dpm2
TU50186 lncRNA upstream 74642 7640376 ~ 7640732 (+) True G34064
TU50133 lncRNA upstream 117854 7596285 ~ 7597520 (+) False tmem119b
TU50263 lncRNA downstream 140977 7865167 ~ 7934699 (+) True G34104
XR_006250969.1 lncRNA downstream 187902 7912092 ~ 7931348 (+) True LOC122345061
TU50276 lncRNA downstream 268962 7993152 ~ 7996158 (+) True G34116
TU50344 lncRNA downstream 404915 8129105 ~ 8131150 (+) True G34163
TU50343 lncRNA downstream 406232 8130422 ~ 8131150 (+) False G34163
XM_043239877.1 mRNA upstream 12203 7683735 ~ 7703171 (+) False sh3glb2b
XM_043239886.1 mRNA downstream 58326 7782516 ~ 7792838 (+) False p2rx1
XM_043239883.1 mRNA downstream 58327 7782517 ~ 7794754 (+) False p2rx1
XM_043239885.1 mRNA downstream 58327 7782517 ~ 7794754 (+) False p2rx1
XM_043239884.1 mRNA downstream 58328 7782518 ~ 7794754 (+) False p2rx1
XM_043238515.1 mRNA downstream 250893 7975083 ~ 7976638 (+) True LOC122344894
XR_006251015.1 other upstream 148798 7558940 ~ 7566576 (+) False svopb
TU49922 other upstream 269158 7425705 ~ 7446216 (+) False G33890
TU49927 other upstream 269158 7426257 ~ 7446216 (+) False G33890
TU49925 other upstream 269158 7426981 ~ 7446216 (+) False G33890
TU49933 other upstream 274599 7420140 ~ 7440775 (+) False G33891
TU50226 other downstream 29884 7754074 ~ 7797968 (+) True p2rx1
XR_006250944.1 other downstream 277388 8001578 ~ 8010599 (+) False spns3
XR_006251032.1 other downstream 565530 8289720 ~ 8304151 (+) False snx19a
TU50789 other downstream 1143323 8867513 ~ 8871518 (+) False man1b1b
TU51316 other downstream 2072200 9796390 ~ 9799358 (+) True si:ch211-102c2.4

Expression Profile