RNA id: TU50681


Basic Information

Item Value
RNA id TU50681
length 1961
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G34409
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8532539 ~ 8539718 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttttttttttGTCAGTAAATTCCATTTATTGAAAGAATGAGATCAGGTCACACATTAAAAGTTTgatcaaacaaaagaaatataaagGTTTCGTAATTTGTTCCTAGATTAATAATTCCGAGGTCAATTAAGCATTATGTAAAATCCTAAAACACATCCAAAAGACAGAtctatttacatattataaagtataaaatacacacaaggCACACtatcattaaaaatgcaggtaaagtaaacaaacaaaatatcaatGATTACGACGAACAGCGGGAGGGGACATTATTTCCTGAATGGGGAACATTCATATCGTCTTCTTTTCCCCAAGAAGTTTCTATCTCATAGTGCAGTTAGGtaaaaatagcatatatatatatatattagttcaCACAAAACTAAACAGCTGCTTATAATCAGGGCAAATTCTATTGATAGGGAATTTATATCAAACCCCTTAGGTTACCGCTCACAGATTTATAATAGttcaataaattacatttctattcatttcTACAAAACCGGCTTAGATTCCAAAAACTAAATCTGTAATCTGTGGCTGCTTTAAAGTTTTTGGGCATTTCTcgacacacccacacacacgcactggtGCTAATTgtatgaacaaaaaacaaaaaaaaacattgatctAGGCACTGAATCTTGACATTTCATCCAGAGTAGCACAGACTACACAACAAAAGATGACTTCTGTCTGAATTCCCCctgaaacagacacacaaaacgGCGTGAATAATTATGTTATTACCACTGCTCTGTTGAAAAGGAAACTCAAAACCAACTACAGAAAAGAGCGAATCACGATTAATATCATGTGCGCAACTGAGCAAGATGTATTGTACTCACATCTCCGTCATCTATATCATCTGTTCTGGGCTGCGTATAAACAGCTTGCTTTGGCTTGCTGCAAAAgatcatttatatacatttattacattacagaATATTTTGTAGTATCATATGTCATATATGAGGTTGTATGtggcacaggaaaaaaaaaaacaattcttacCTTTCTGCTTTTTCTTGGCAGATATCCCTTTCTACTGGCATACCATAGACCAAAGAGGAGCAATCCTACTGCCAGCAAAGCCACGATAACCCCCGCAACAATGCCACCAACATTCAGATCCTCtataaaatcaaagaaaaataacaaacagaGGTAAATACCAAAAATCATACTTGATGCTCTCTCTTTACAAAGTCATCATAAAGCATCAAACTGAAGCAAAGAGTGTGAATTAAGGCTTATTTGCACCAAGAATAAAAAGGTAATTACATCAGCATTCATACAAATGtacaataatgtttattgtaacTATGCTCTGCAGTTATGTCTGATGCTTTAAATGCTTAAGTGAAAGTCTGTCAATGCTCTTGTTGTTCCTCAGCTgaagaaaatgtgtattttcataaaatgaGAACAACTAACTGATAAGTTGTGGTTTCCTATTAAGAACACAGCATCAAGAATTATTAATTGAGCTTCTTGTGTAATGTCAGACAGACTTCTACCGTATGGGACTAACACTTCCGCCTTGAGAAAGGTGCTTCAAAAACATGCTGTAAACTGAAACCGCCTATGGTCTTCACAGAATAGGAGCAGTAGTCTGGTAACATTTTTCATACCCCTTTCCTTGTTTCATTTTCCCATGCTTATCCAGAACCTTGAAACGCTAAAAGTGAAATGTTACACCATGTAAGAATGCTGACTTACGGACATCCATGCGCACAGCATCCCCACGCTGAGGAGAGCCTTCTCCATTACTGGCCTCACAGAAATATGAACCAGTATCCAACTTAGACACACTCACGAACTCCTGatcacacaaagaaaacaatttcacaaatataaatcttttaaaagacCATAAAACAACGACAAGTTCATTAGAAATATATAGATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50665 lncRNA upstream 59194 8472435 ~ 8473345 (+) True G34398
TU50654 lncRNA upstream 72300 8456788 ~ 8460239 (+) True G34387
TU50651 lncRNA upstream 84261 8447852 ~ 8448278 (+) True G34384
TU50650 lncRNA upstream 85518 8446798 ~ 8447021 (+) True G34383
TU50610 lncRNA upstream 101265 8428483 ~ 8431274 (+) True G34358
TU50715 lncRNA downstream 24927 8564645 ~ 8565496 (+) True G34418
TU50752 lncRNA downstream 102473 8642191 ~ 8642681 (+) True G34449
TU50787 lncRNA downstream 323128 8862846 ~ 8864201 (+) True G34466
TU50795 lncRNA downstream 334377 8874095 ~ 8874695 (+) True G34470
TU50798 lncRNA downstream 398547 8938265 ~ 8939370 (+) True G34472
XM_043240296.1 mRNA upstream 87628 8436564 ~ 8444911 (+) True bco2a
XM_043238675.1 mRNA upstream 97156 8432779 ~ 8435383 (+) True sdhda
XM_043240080.1 mRNA upstream 118461 8400980 ~ 8414078 (+) True zbtb44
XM_043240717.1 mRNA upstream 132047 8387887 ~ 8400492 (+) True adamts8a
XM_043240240.1 mRNA upstream 229016 8289720 ~ 8303523 (+) True snx19a
XM_043238585.1 mRNA downstream 35293 8575011 ~ 8589177 (+) True cfap77
XM_043240152.1 mRNA downstream 49716 8589434 ~ 8593532 (+) True barhl1a
XM_043239031.1 mRNA downstream 91673 8631391 ~ 8632797 (+) True spaca9
XM_043238924.1 mRNA downstream 108029 8647747 ~ 8662781 (+) False grin1b
XM_043238919.1 mRNA downstream 108032 8647750 ~ 8673117 (+) True grin1b
XR_006251032.1 other upstream 228388 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 521940 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 734571 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 965963 7558940 ~ 7566576 (+) False svopb
TU49925 other upstream 1086323 7426981 ~ 7446216 (+) False G33890
TU50789 other downstream 327795 8867513 ~ 8871518 (+) False man1b1b
TU51316 other downstream 1256672 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 1524499 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 2189400 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 2387105 10926823 ~ 10933163 (+) False senp3a

Expression Profile