RNA id: TU50752



Basic Information


Item Value
RNA id TU50752
length 354
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G34449
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8642191 ~ 8642681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTATCATGGGGCTCCCTGACAGAAGACAGGATGTCCACTGCTTGAGATGAGCTTGTCTCCAGGAAATAGTCCACAAGGCTATTCAGCAACATGGTCAGTGGACCCCAGAAGAGGGACGAGGTCAAACACGTTTGGCTGTTCTTTGGCCATAGCTGTGCAGGACAGTGGGCAGGACTGATGCCTTTGTCACAGCGTAAACCGATGCCCTGTGGTGTCAGCATGGGGTGTGTATGCATGAACTAGcgacaaaaattacaaaacacaatCACTGTTAAACAAAGAAAGAGCAATAACGCGAGTGACGTCAACGTGCTGCCAAAAACAGTCTGTGTCTTTAAATCGAGCAACGCGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50715 lncRNA upstream 76695 8564645 ~ 8565496 (+) True G34418
TU50681 lncRNA upstream 102473 8532539 ~ 8539718 (+) True G34409
TU50665 lncRNA upstream 168846 8472435 ~ 8473345 (+) True G34398
TU50654 lncRNA upstream 181952 8456788 ~ 8460239 (+) True G34387
TU50651 lncRNA upstream 193913 8447852 ~ 8448278 (+) True G34384
TU50787 lncRNA downstream 220165 8862846 ~ 8864201 (+) True G34466
TU50795 lncRNA downstream 231414 8874095 ~ 8874695 (+) True G34470
TU50798 lncRNA downstream 295584 8938265 ~ 8939370 (+) True G34472
TU50809 lncRNA downstream 351215 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA downstream 351215 8993896 ~ 9001220 (+) False G34480
XM_043239031.1 mRNA upstream 9394 8631391 ~ 8632797 (+) True spaca9
XM_043240152.1 mRNA upstream 48659 8589434 ~ 8593532 (+) True barhl1a
XM_043238585.1 mRNA upstream 53014 8575011 ~ 8589177 (+) True cfap77
XM_043240296.1 mRNA upstream 197280 8436564 ~ 8444911 (+) True bco2a
XM_043238675.1 mRNA upstream 206808 8432779 ~ 8435383 (+) True sdhda
XM_043238924.1 mRNA downstream 5066 8647747 ~ 8662781 (+) False grin1b
XM_043238919.1 mRNA downstream 5069 8647750 ~ 8673117 (+) True grin1b
XM_043238920.1 mRNA downstream 5073 8647754 ~ 8673117 (+) False grin1b
XM_043238921.1 mRNA downstream 5089 8647770 ~ 8673117 (+) False grin1b
XM_043238922.1 mRNA downstream 5092 8647773 ~ 8673117 (+) False grin1b
XR_006251032.1 other upstream 338040 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 631592 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 844223 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1075615 7558940 ~ 7566576 (+) False svopb
TU49925 other upstream 1195975 7426981 ~ 7446216 (+) False G33890
TU50789 other downstream 224832 8867513 ~ 8871518 (+) False man1b1b
TU51316 other downstream 1153709 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 1421536 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 2086437 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 2284142 10926823 ~ 10933163 (+) False senp3a

Expression Profile