RNA id: TU51302


Basic Information

Item Value
RNA id TU51302
length 528
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G34842
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9767294 ~ 9767821 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTTGACAAGCCGCTGTTTTAAATCTGTGTAGGTTTTTGAAACAGGAAAAATTTGCGTTTAAGAAATCCACAAGCGGCGAGGATTTAGCGGAGCGTGTAATGatgagaaatgaaataaaaattctgaaacTCAAAATACAGGATGTGGTGAGCAAGCGATTTCGGTCCTCTAGTAACCTCTAGTGGAGAACATATTAAACGGCAGGCAGTTTGAAATGTCAAACGCCTCTGTGTGATAAATTGCGTTTGTTTCATCATAATGAAATACCATATAACGTTAGGCTAAATCATCATTGTGCCTGACTGCAGCAGTGAGTGTGCTAGTTTACTATCGTAGCTAGAAGAGCACGTTTaacatttatctgtttattatcGAGTCTTTAAGCGCTTATTTCATTTACTACAATAAATGGACATGGACTGTTCACAAATGAAGTTCTGTTAGAAGAACTACACGTTACATTTCTATGTCTTATACGGATCGAATTCTCCTGAAGTAGCAATTCCAGTCCAATTGAGGAAGCGAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51301 lncRNA upstream 945 9765970 ~ 9766349 (+) True G34841
TU51300 lncRNA upstream 1947 9765136 ~ 9765347 (+) True G34840
TU51186 lncRNA upstream 201387 9478605 ~ 9565907 (+) True G34747
TU51161 lncRNA upstream 333787 9360859 ~ 9433507 (+) True G34725
TU51096 lncRNA upstream 515504 9248259 ~ 9251790 (+) True G34688
TU51323 lncRNA downstream 40628 9808449 ~ 9810850 (+) True G34861
TU51418 lncRNA downstream 240226 10008047 ~ 10028821 (+) True G34905
TU51425 lncRNA downstream 264618 10032439 ~ 10033955 (+) True G34911
TU51449 lncRNA downstream 296396 10064217 ~ 10118126 (+) False fam219ab
TU51451 lncRNA downstream 296396 10064217 ~ 10139733 (+) False fam219ab
XM_043240503.1 mRNA upstream 16851 9741151 ~ 9750443 (+) False htra4
XM_043240504.1 mRNA upstream 16851 9741151 ~ 9750443 (+) False htra4
XM_043240505.1 mRNA upstream 16851 9743617 ~ 9750443 (+) True htra4
XM_043239199.1 mRNA upstream 205662 9559613 ~ 9561632 (+) True drd7
XM_043240697.1 mRNA upstream 365634 9400659 ~ 9401660 (+) True tcima
XM_043240286.1 mRNA downstream 434 9768255 ~ 9772485 (+) True lman2lb
XM_043240705.1 mRNA downstream 8809 9776630 ~ 9779888 (+) False zgc:64051
XM_043240704.1 mRNA downstream 8815 9776636 ~ 9779888 (+) True zgc:64051
XM_043239069.1 mRNA downstream 28560 9796381 ~ 9798127 (+) False si:ch211-102c2.4
XM_043240799.1 mRNA downstream 45375 9813196 ~ 9816869 (+) True ccdc117
TU50789 other upstream 895776 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1463143 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1756695 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 1969326 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 2200718 7558940 ~ 7566576 (+) False svopb
TU51316 other downstream 28569 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 296396 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 961297 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1159002 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1278659 11046480 ~ 11062314 (+) False map7d2a

Expression Profile