RNA id: TU51323


Basic Information

Item Value
RNA id TU51323
length 2199
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G34861
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9808449 ~ 9810850 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGTGTTgaagatttatttaatattttttcattataagtCATGCACAACACAGGTGTTGAGTCAGAGTTACCTAAAAAGCTAATTTGCATCTGCTGACTGACTTCACATTCTGTCAGTAAGACTAGAGTCTTAAGTTTAAACTATCAAAGCAATATCACAGATATACATGAAGTGATCTTTGCGAGGCATTTCTCAGCTAATACCTATCAACACAGAGTACTGTGTGGCCATCTAATGGCCATAACAATGCACAGCAAGAAAAGTGCTGCTTTTCTCCGGCTTTGGGTCtacattaaaaatcatgttaGATAAATGTGTATTGCCATTATTTTCACCTACCTTCATTAATGTGAAGATGTTCATTACAGTGTCCATTTTTATGGATAAGGTTTTCCCTGCATTTTAACAAAtccacacatttttaaaatattagtagtttttattttacatttgttcatCTAGATTCATAGCAGCTGCAGtctcacacaaaaatatatgttaGATTTCAAAAGATATAAGCATATTACATCCCTAAATAATCCCATAAACTAAACCTTCAATTAGTCAAGCAAACTGAGGCGGCCATCAGTGAGGCGACCTTCAATGTTGCTTAcgacatgaaaataaaatcaaactacTATATGCATAGATTCATAAGcatatttaggttttattttattaatctctTCTCTTGCTTCCAGGAAAATAATCAATATCCAGTGTTCTTAATGGTGATTTTTTGAGCTGAATCAATCTTATAGTCTTTGATACCTAAGGAGAAAAGCACAgtagttaatataaaaataaactgagaTGATAAAAAACAGTCCGTAAGACAccatgcaatacatttttatagacaAATGCATGGTTACACCTATTTAGCATAAAATTCTCTCACCCTGTGTCAGAGAGCTGCCATCTGAGGAGATGTGCCAGTATCTACGATCAGTCTGGCGTGCTTGTTCTTCATTGATCACACTGAGGAAGGGTCCCCACAAGCTGTCCTCTGTGCTAAAGCTGTGATGAATGGAGCAAACGAATGGAGGGTTGTTCATAatcaaaaactgtaattaatacagtaaaaagcaaTCTTTTTTGACAATATAGTTTAAATGAAGCATCTTGAGAAATCCAAACTCACGTGAAACCAGTTTGTTTGTCTTGGAGCAGTTTGAGGGCTTCAAATAGAGATGAGCCCTTGGGTGCATGAATGAAAAACACAGACGATGCACCGTTTGATTTAATAACCTCCACCTCTAGTGGCACTTGCCCGAGACTTGGGAGGACTTCCGAAGGGGAATCCGCATCAATAGTCAAAGTGTCTAAAGGAAtattaaaaaggacaaaaacacaaaaattattaaGCAAACAAATTCTGATATACTTTTGAGACTTACTAAAACTGCTTAacgttaaatataatattttgtgtataatatataatgttgaaATACTCTAAACGCattaatttttatcatttaaataattataataacaattacattttaggaTTTTACGAAcagcacattttctttttgcatatcATTTTTGAGTTATTTACATACCGTCCTCGTTGCGGCATTCTTGCCTCTTCAGATGAAGGTAAGTGCGTTGGTGTAGAGCTGGCAGGACTTGAGACATGGCCATAGGGTTATGGTATGTTCCTTTCTTAACATCTTCCCTTAAAGCCTCAATAGCAGAGCCACATTCCTCCATCTGACTGCCCATAGCCATCAAGGCCTGTAAGACAGAGAACCGTGAGAACCCGTCACTCAAATAAGGTCTTTATATTTaaccaaatatttaatatcttcATTCTTACCTGCACCGCCAATCCTGTGCTGAACTCATTGCCCATGTGACCATCAGCTCTCTTTGAGTCAAGAAGCCTCTGCTTAATGGTGGCAAGAACCCTGTCTAGCTCTGCATTATCTTTAACAGCAATTCCCTCATCTTTTAGACACTGCAGAGCCATGCCTGCCATTGCATGCGAGTCTGAAGGGTGAAAGAGGATAGTGACCTCAGGACAATTTAATACGACACATAAGGACTCTCCGTGTTTTAACTGTTTATGTTCCACAGCATGGATGAGCTTTTGGCTGACGTGTGTGCTGACTCTAACACCGCTCACACACAGAGCCAGTATACCTAGAGAGTACTGGTAGTAGTTGGTCTTTGGACGGTGACCGACTgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51302 lncRNA upstream 40628 9767294 ~ 9767821 (+) True G34842
TU51301 lncRNA upstream 42100 9765970 ~ 9766349 (+) True G34841
TU51300 lncRNA upstream 43102 9765136 ~ 9765347 (+) True G34840
TU51186 lncRNA upstream 242542 9478605 ~ 9565907 (+) True G34747
TU51161 lncRNA upstream 374942 9360859 ~ 9433507 (+) True G34725
TU51418 lncRNA downstream 197197 10008047 ~ 10028821 (+) True G34905
TU51425 lncRNA downstream 221589 10032439 ~ 10033955 (+) True G34911
TU51449 lncRNA downstream 253367 10064217 ~ 10118126 (+) False fam219ab
TU51451 lncRNA downstream 253367 10064217 ~ 10139733 (+) False fam219ab
TU51473 lncRNA downstream 292035 10102885 ~ 10106441 (+) True G34941
XM_043239069.1 mRNA upstream 10322 9796381 ~ 9798127 (+) False si:ch211-102c2.4
XM_043240705.1 mRNA upstream 28561 9776630 ~ 9779888 (+) False zgc:64051
XM_043240704.1 mRNA upstream 28561 9776636 ~ 9779888 (+) True zgc:64051
XM_043240286.1 mRNA upstream 35964 9768255 ~ 9772485 (+) True lman2lb
XM_043240503.1 mRNA upstream 58006 9741151 ~ 9750443 (+) False htra4
XM_043240799.1 mRNA downstream 2346 9813196 ~ 9816869 (+) True ccdc117
XM_043240800.1 mRNA downstream 2346 9813196 ~ 9816869 (+) False ccdc117
XM_043238408.1 mRNA downstream 18267 9829117 ~ 9831937 (+) True rnf181
XM_043238598.1 mRNA downstream 52780 9863630 ~ 10028037 (+) True arvcfb
XM_043238596.1 mRNA downstream 52780 9863630 ~ 10028037 (+) False arvcfb
TU51316 other upstream 9091 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 936931 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1504298 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 1797850 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 2010481 7754074 ~ 7797968 (+) True p2rx1
TU51450 other downstream 253367 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 918268 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 1115973 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 1235630 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 2113378 11924228 ~ 11942072 (+) False smarca1

Expression Profile