RNA id: TU51449


Basic Information

Item Value
RNA id TU51449
length 2633
lncRNA type read_through
GC content 0.44
exon number 3
gene id fam219ab
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10064217 ~ 10139733 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttttttttttttttttttttttttacagttttctttgttttaattcatcCTTTATGTACATTTACAGGTAATGAAAGCAGCTGAACGTTGCATAAATGATACTGATGGAAAAGCACGGCACGTGTATGTACAACGGTAGTGGCTCAAGTCCTGCAAGACACATCACAACACTGGCATTTGCGCTACGCAACCGAGAAGAGTTTCGTAAATTACAGCAAAGTACTTCTCAGTAACTTGCGATTTACATTCTGCAGTCTAAGAGGTCTTAAGCTCTAAACAAGGCACAGGTTGAGCATTTTTTACATCGACAGCACGTTTCAAATAACCTGCTTCTTGATTTCAGGCTCGCAAACCTACTAAACGTACATCTCAACAATAAATTAGCACAGATACTAATAAAAGCCAAACATCCGTCGATCCGTTATCgtgacataaaatataaaaatctatacaATTGTTATTGAATAAAGATCCAATAGATGCATTGATTGTTGATTCACGTGTAAAATTCAGTTTGTGCTTGGGACGTTTAAAGCACAATGGCTGATCGTTACGGTAGATtcaaacaaaatctaaattctaATTACGTTAAGTATTTCAAGTAAACAGCTGAACAGTGGAAAGACTTCCGAAGTCAAGTGGGACTtgtatgaaaaggaaaaaaaacgaaactaaTAAAAGGCTGCGTTACTCAAGTCCGTAACCGATTAAAAATACTACGCACTGCTAATAAAACCATAGGTAGTGAGAGAAATATAAAACGcttgttctttcttttcagCTGTGCAGTCAGTATATGGAAGGCACagatttcagtttgttttcccATAACACACCTATAGATGGCGGTGGTAAACTATTAATGAGTGAACTTCTGCTAAGCCTCATTGCATCACTAGATTTAGAAGatcaaaagaaacaataaaagtgTTCCGAATAAAGAGTATTTTCGATGCTGTGCATTAAATAAGTTACATTTCCTTTGCATAACTGATTAGGATGTGCAAATAACGAtcgcttaaaaacaaaaaacaaaaaagcttgtGTGCGTAAAACCTCACACGATGCAAAGTTAATCTCGTAAGTACCcaactgttttaatgtcataCAAATACCATCTACGACCCTGAAGTCAACTGCTGTcccacaaaaaacatttatagtgattattttaaaaccCACTTCCAATAACTGGACCACTGCCAAATTTGACACTTCAAAGTCAACAGGAAAACGTGTCTTGCTTTCAGCACGCATAAAGTTTTACTCAGAATATGTTCTCTTCCCTTTGTCACAGTGGGTGGGTGATAAATCCCCTGGCTCCTTTGTATTGAAATCAATTTCATATTTGTGATATGCGATGATATATAAATACCTCTATGCATTTGCAATAACCCTCAGACTAAATGTACATAACATTGTTTCTGCCAAAATCTGATGATTCGGTCCATTCCATTGAGAAGTCCCATTTTCAGGCTTTGTCTAGGAGAACTCCATCAcaacatattttgcatgtctccaTTACGTAACGCCTCTTTTACCTCACATCATCAGCTCAATAACAGAAGCTCCGAGATCTGAGCTTCAGGAAAGAGACATCCAAAATGTGCAGTGGGGGGGGAGGGTCACGTGGTTGCTCAAACACCAGCAGACACGTGATCGCTGGAGCCAGAGGACGACGTGGACGTCGAAGAGTGTCGTCTTCGGCCGGCGGGACCCTGGAGCATGCTGGGGTGGAAGCCGACGTGTCTGCGGGCGTGCTTGGTGAGGTGATCGCTACGCATGAAGCACTTGTCGCAGAGCGGACACATGAAGCGCTTCTCCCCGGTGTGCGTGCGGAAATGTCGCGTCAGCTCATCCGACCGTGAGAATTTCTTTGCGCAGCCTGGCCACGTACACTGAAAGGGACGATTTGCCGTATATTTTCCCACAGCCGGCATAGGGACAGCAGTGTCTCTTCTCAGCGGACGCGTGCAGTCTGTCGCGGTTCCGTGTCCTTTTCCCCCTGCTCGCGCTCTGCCTGCATTTCTCCCGGTTTTCCTTAACGCCGGGTGGATTGTCCGCATCACCGTTCACCATGCATTTCCCGCTGATGCCGCTCGGGATACACTGATTTAAGTCCAGCAGAATCATCGCGACCATTAACAGAGTCCGGCTCTCTTGACTTTGTTCGGATCCCTCCTCGCCGGCTAGTTTGTCTAAGCGGTCACCGTTCGAGACCTGCCCCAAGGACCTTGCTGCAGTATCAACGTCCGTCATTGTAGATAGCCTACCCAAAACGTCCTGGAAACGGATAAATCAGCTGCTACTGTAACTCAGACGCGCTAAAACTTAGGGAGCGGGATTCTCATCGTATGCGCATCGGGATACAGATGACTCCGGAAAACGTGGCTTCACGCCTACACGTGTCTTTCCCAATGTGACTGGGATGATTAATGTTCCGAGAGGAGAATAAAAGCGCGCGTCGCTTGGATCCGAAAGCACAAGTTATCGAATAAACATCCAGGTGCTGTTCCCGGTGTTATTTCAGCCACGTAAGAAAAGCGTGGAACTTCGCGTGCTGTCATTCGCGTCTATCCTCACAAGTGCGTCAACTCCGTGCGGCTGTTTGCTGTTCTCATCTGAAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51425 lncRNA upstream 30262 10032439 ~ 10033955 (+) True G34911
TU51418 lncRNA upstream 35396 10008047 ~ 10028821 (+) True G34905
TU51323 lncRNA upstream 253367 9808449 ~ 9810850 (+) True G34861
TU51302 lncRNA upstream 296396 9767294 ~ 9767821 (+) True G34842
TU51301 lncRNA upstream 297868 9765970 ~ 9766349 (+) True G34841
TU51490 lncRNA downstream 143486 10261612 ~ 10264441 (+) True G34957
TU51488 lncRNA downstream 167641 10285767 ~ 10287373 (+) True G34956
TU51492 lncRNA downstream 170298 10288424 ~ 10291861 (+) True G34959
TU51629 lncRNA downstream 207740 10325866 ~ 10326714 (+) True G35040
TU51630 lncRNA downstream 208905 10327031 ~ 10327461 (+) True G35041
XM_043238610.1 mRNA upstream 21907 10034953 ~ 10042310 (+) True erap1b
XM_043238602.1 mRNA upstream 36180 9863631 ~ 10028037 (+) False arvcfb
XM_043239192.1 mRNA downstream 154897 10273023 ~ 10275197 (+) True c5h9orf85
XM_043240753.1 mRNA downstream 158741 10276867 ~ 10282029 (+) True gda
XM_043240292.1 mRNA downstream 179006 10297132 ~ 10306693 (+) True tmc1
XM_043240424.1 mRNA downstream 191483 10309609 ~ 10318604 (+) True tmc2b
XM_043240831.1 mRNA downstream 201534 10319660 ~ 10324635 (+) True LOC122346143
TU51316 other upstream 264859 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1192699 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1760066 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2053618 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 2266249 7754074 ~ 7797968 (+) True p2rx1
TU51709 other downstream 610992 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 808697 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 928354 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1806102 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 2131012 12249138 ~ 12255672 (+) True G35720

Expression Profile