RNA id: TU51492



Basic Information


Item Value
RNA id TU51492
length 941
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G34959
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10288424 ~ 10291861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTTGATTTGGACTCAAtattttgcaccctcagattccagatattcgAATAGTTGCTTCTCAGCCAAGAATTGCACTATCCTAACAAACCCTACATCATTGGAAAGCGAATTCATTCATAAGGACTGATTTTGCGGTCCTAGGTCACATATATACCCGCCATTGTATTTCACAAATAGAGGGGATCATTATGTTTGATGGTCCTTGACATGAAATTCTTTGTTGAACTAAACACgctgctttaaaatgtacttaatcaCATTTCATTGCAATTACCTGGTTCAGCAGCCTCAGCTTTAGGAGACAGGGCCTTTTCCTCTCTAGAAATGCTCATTTCTGTCATCTGTTGTGTGACTGGTAAGgaggtggaaggaatacttctGCAAAAGCAAACAGGTGGGGGTTTTAGCGTGCTCCGGCATTTCTTGAAACACAGGAGATCATTCAAACGTCAAGCAGccggacaaaaaaaaaatgcattcctTCCTTCATTCTGAGGTTTAACAACATACACGCACGTGAGGTACTCACTCTCTCATGGTATCTGTGCTGGGTGCAGGTGAAGGCTCTGCTTTGTTTATGCTGGCTTCTAGTCTCTGTATGGCGGAGGCCTCTGCTGAGGGGCTGCCAGCTGGGGGCTCATGGGACTACGATCACTGCTTTGCTGTCTGTTCAGGTGCTCCTTATAGCACACCGAACACATGCCATTGGTCCTGGGGTTGCCATAGAAACCACAGCCTGTGGTACACAGTATAGGAACGGGACTCTGGTTTGTCTCTTGGGCCATTGCtgaaatcttttaaaatctaATCGGTCGATGAACGTCGGTTAAAGAAACGGGAACTCTTCGAAAAGGAGTTTGTCTTCCTCCCGAGGCTTTGTCGGTGatgtaaataagtaaattcCTCTCCCGTCCTCTCCTCCCGAGCTCTCCCTTCTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51488 lncRNA upstream 1051 10285767 ~ 10287373 (+) True G34956
TU51490 lncRNA upstream 23983 10261612 ~ 10264441 (+) True G34957
TU51451 lncRNA upstream 148691 10064217 ~ 10139733 (+) False fam219ab
TU51449 lncRNA upstream 170298 10064217 ~ 10118126 (+) False fam219ab
TU51473 lncRNA upstream 181983 10102885 ~ 10106441 (+) True G34941
TU51629 lncRNA downstream 34005 10325866 ~ 10326714 (+) True G35040
TU51630 lncRNA downstream 35170 10327031 ~ 10327461 (+) True G35041
TU51631 lncRNA downstream 38028 10329889 ~ 10330322 (+) True G35042
TU51632 lncRNA downstream 41358 10333219 ~ 10333808 (+) True G35043
TU51689 lncRNA downstream 255360 10547221 ~ 10547625 (+) True G35081
XM_043240753.1 mRNA upstream 6395 10276867 ~ 10282029 (+) True gda
XM_043239192.1 mRNA upstream 13227 10273023 ~ 10275197 (+) True c5h9orf85
XM_043238927.1 mRNA upstream 173639 10109179 ~ 10114785 (+) False fam219ab
XM_043238928.1 mRNA upstream 173639 10109186 ~ 10114785 (+) False fam219ab
XM_043240818.1 mRNA upstream 188144 10096934 ~ 10100280 (+) True LOC122346129
XM_043240292.1 mRNA downstream 5271 10297132 ~ 10306693 (+) True tmc1
XM_043240424.1 mRNA downstream 17748 10309609 ~ 10318604 (+) True tmc2b
XM_043240831.1 mRNA downstream 27799 10319660 ~ 10324635 (+) True LOC122346143
XM_043240832.1 mRNA downstream 27824 10319685 ~ 10324635 (+) False LOC122346143
XM_043240819.1 mRNA downstream 45362 10337223 ~ 10341120 (+) True anxa1a
TU51450 other upstream 170298 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 489066 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 1416906 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 1984273 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 2277825 8001578 ~ 8010599 (+) False spns3
TU51709 other downstream 437257 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 634962 10926823 ~ 10933163 (+) False senp3a
XR_006251083.1 other downstream 754619 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 1632367 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1957277 12249138 ~ 12255672 (+) True G35720

Expression Profile