RNA id: XM_043239764.1


Basic Information

Item Value
RNA id XM_043239764.1
length 5069
RNA type mRNA
GC content 0.45
exon number 14
gene id gria3a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11266642 ~ 11303431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaacaatgtccACCCAGACTCAAAAAATAGGCCAGATATAACAGATTCTGCTACCATAAATCTTAGAGTTCTGAAATTTCCTATTgttgaacacattttttttaatgacaaacaGGTACTTCACTAGAATAAGATGATTGTAGGAAGTGAGCTCACAAGCATTTGAATATAACCTGCAGTGCAATTAAATTAGCTCACAGCTCTCAATCATTATGCAAAATGAAACAACTTTCCACTTGCTGAAATATAGGACAGATAATTCCATAGGGCTTCTGATGTAtgtggtgtctgtgtgtgtgtgtttgtattatgCATAAGCATTAATTGGTAAGTTTCTTTAATCAAATTCTTGAGCTTACAGCATTGTAATTTGGTATTACTGAGatactaaacttttttttttattattaagatttgttttattttctggtttcattttaaattcgtaaaacttttaagttttatgtaattttttgttgtagttTAAGTTTGTTATTCTTAAAAGAGAAATGCGTGATAAGTGTGTGGTCATTGGATAATAATCATTATCAATAAAGAGGGGggtatcattatgaaataatatatttaatgatatttgttGGACATGGCTGTATGTAtgccacatatatatatgtgtgtattctATATACACttacgcgcacacacacgcacatatgtatgtgcgtgtgtattCTAGTTTGACGCATTTAGGGTTCAGAATTAACTTTTATTGtatactgtttgttttcttttatttagtcaACTTCCAGTGACATTGTACCTGTTGTTCTACATTGTTGAGGTGTAGTGATAATGCAGCGctacatttttttcaatcaacAGCATGTCAatcaaaagaatattttattactttcaaTTAAGTAGCATGTTTTTAGCTTTAAGGCCTCATAGGGGATTGCATAGCATGTGTACTATTTTGCAGAGCTTGCGAGGGCACCCCATtgtttttctcatgtttttccCCATAATATAACTTTTGTGCTTTTCCGCTGTCGTGGGAGTACAGAGGACTCAAAAGACATCAGATCAGCTGCGTTCCATCTGTGAAAAGCCAGCTGCAGACATCTCTATCGTTTCAGTGGCAGGGATGCGTTGTGGGTGTGTTGCATGCTAATCTGAATTCAAAAACGGCCAGTTCAATGTTAAATCCATTTAATTAATGACGCCTGTAAGCAACATTGacttaataataaagaaaaaatattaagatgagCAATTCTTTCTCTTTAGAGCCATTATGTgtgatttaaacaattttttgaattgaattgaattcagACATAatggaattcatttttttttatattcacatgGCTTATCCAGCCATCTGCACATCAAGCTGCAAGTCAAAATTTAGCCAAAAGACAATGTGGTCAACACACATTAGCAGGCATATGGTTcacttatatatatgtgtgtgtgtgtgtgtgtgtatgtgtctccATTCAACAAGAGAGTCGGTCTGATAAATCTGGCACAGAGTACACAGGCATGGCTTGTATGGTCagtatagacacacacacacataggaaATAAGGAGCTGAGGAAATCTGGGTCGCTGTTAGTCAGCCGTATCCAGCTCAGAGCTGTGAgctttcagttttgggtgatgCCAAGGCTGAAAATGTGGAAGCATATCACAATTACAGGCACCTGCAGAGAGCTTTTCTCTTTCAAGGAGATTGTATAATGGCGTAAACGGTctaaatgcatgaaaacattattacagaTGAACACGTTTTCATTACACAAGTCAGTTCTTAGAAGCACAAAAAGACAGCTTGTGTTATCTGAAGCACTCCAGAGACAGacttcacacacacagccaaCAGCAGCGATCAAACAGATCAGaggattaaaaaacaaaacaaaaaaaaaatcacttgtgtagaacaaaatagaaaaacacGCAGGCTACGTGAAAATAATACACGGATAATATGGAATCAACCAGCAAGCGTCTCCCGATGGTTTTTGAGGGAAAGCACAAACCTGAATTGTTTACACTCACGCAGTGCAGGCTGTTTGCTAAAGACCTCAAGTTTACAGCCTGCAGAGATCACCTCTATTCGACATCAAATATTAATCTTCTGTTAGAAATTCCGACCTCGTATATCAAAATCCCTCGTTCTTCCGCGGATAGCGTTATACTATGTGACTAACGCGCGGGTGTGGGACAGTAAAGGTCCGCACCTGTGGGCTGTTGTGTgaactttaattttttgtgtgttgatttttttccccccactgaATGCACACGGGGAATATAAGGGCTTTAAACGACGGCTTTGAAGTGGACTGTTCCCAGGGTCGCCTGCCGCTGTTTCTGAGCTGTATGCGGACTGCGCACGCGGGTCCGCAGTGGCGCTGTTGTAATTTCACGTCACATCAAGTTTGATCAGCGGTCCGATTGGACGATCCGCAGCGCTGTCCTGAATTGAGAGGCTCTCTCGCTTGTTCGCTCGTCCCGCATCCCGAATGCGCCTCTCCGGCGTCGCGTGAGGGAGTCGGTGCGCATCTGGCGTGTTTTGTCGTCGGTCTGGATGTTACGCGTGAGCTGAAGATTTCTAGAGGTCGGCGACAAAATGCGGCGGCGAGCGCACGCCAGCGTCCTGCTCCTGCCGTGGCTGGTGCTGCAAACCCAGGCAGGCTTTCCAAACCAGATCAATATCGGTGGTCTCTTCATGCGCTCCACTGTCCAGGAGCACAGCGCGTTCCGCTTCGCCGTTCAGCTTTACAACACCAACCAGAACATCACCGAGAAGCCCTTTCATCTGAATTATAACGTGGACAATCTGGAGTCATCCAATAGCTTTTCAGTCACGCACGCGTTCTGTTCTCAGTTCTCCAGGGGTGTATATGCAATATTTGGATTCTACGACAGGAGGTCAATGAACACATTAACGTCGTTCTGCGGCGCTCTCCACACCTCCTTCATCACACCATCTTTTCCCACGGACACAGATGTGCAGTTTGTCCTGCAGATGAGGCCAAGCCTCCGAGGGGCGCTGCTCAGTTTGCTAGACCATTACAAATGGGAGAAATTCGTCTACCTGTATGATACCGATAGAGGGTTTTCCATCCTTCAGGCTATCATGGAATCTGCGGTAATGAATAATTGGCAGGTGACAGCACGTTCAGTGGGGAACATAGTGGATCCCCTGGAATACCGGCGCATTATTGAAGAAATGGATCGTCGACAGGAGAAGCGTTTCCTTATCGACTGTGAGGTCGAACGTATTAACAGTATTCTAGAGCAGGTCGTCATCTCAGGAAAGAACAGTCGAGGATATCATTACATCCTGGCTAATCTTGGGTTCTCCAACATGAGTCTGGATAAGGTATTTTCAGGCGGTGCAAATATCACCGGATTCCAGATCATAAGTCCTGATAGCCCAATCGTGCAGCAGTTCCTTCAGCGCTGGGAGCGGCTCGATGAGAGAGAGTTCCCTGAGTCTAGAAACGCTCCCCTGAAGtACACCTCTGCTCTGACACACGATGCCATCCTCGTGATAGCCGAAGCTTTTCGGTATCTGAGACGTCAACGTGTTGATATTTCTCGTCGAGGGAGTGCAGGCGATTGCCTCGCCAACCCGGCTGTACCATGGAGCCAGGGAATCGACATTGAGAGAGCTCTCAAAATGGTTCAGGTTCAGGGAATGACGGGAAATATTCAGTTCGACTCGTTTGGACGGCGATCAAATTACACCATTGATGTTTATGAAATGAAACCAGGAGGAGCCAGAAAGATTGGCTACTGGAATGAATATgagaaatttgtttatatagtgGAGCAGCAGGTTACCAACGAATCCTCCTCTGTGGAAAACAGAACCATTGTGGTCACTACTATTATGGAAGCTCCATATGTAATGTACAAGAGGAATTATATGCAGTTGGAAGGGAATGATCGCTATGAGGGCTACTGTGTTGACTTGGCATCAGAAATCGCAAAGCACGTGGGCATAAAGTACAAACTGTCCATAGTGGCTGATGGGAAATACGGAGCACGCGACCCTGAGACCAAGACCTGGAACGGCATGGTGGGGGAGTTGGTATATGGGAGAGCAGATATAGCTGTGGCTCCTCTCACTATAACCCTTGTCCGGGAGGAGGTGATAGATTTCTCCAAGCCCTTCATGAGTCTGGGCATTTCCATCATGATCAAGAAACCACAGAAGTCCAAACCGGGAGTCTTCTCCTTCCTGGATCCGCTGGCCTATGAGATCTGGATGTGTATTGTGTTTGCATATATCGGTGTGAGCGTGGTTCTCTTCCTGGTGAGTCGTTTCAGTCCATACGAATGGCACCTGGATGAGAATGAAGAGGCGAAGGATCCGCAGACGCCCCCCGATCCTCCCAATGACTCCGGCATCTTTAACAGTCTCTGGTTCTCTCTTGGAGCTTTCATGCAGCAAGGATGCGATATCTCACCAAGatctctgtCTGGCCGTATTGTTGGAGGTGTGTGGTGGTTTTTCACTCTGATCATCATTTCATCCTACACGGCCAATCTGGCTGCTTTCTTGACTGTGGAAAGGATGGTGTCGCCAATAGAGAGCGCAGAAGACTTGGCAAAGCAGACTGAGATCGCCTACGGTACACTTGACTCCGGTTCCACCAAAGAGTTCTTCAGGcGCTCAAAGATCGCCGTCTACGAGAAAATGTGGTCCTACATGAAGTCAGCCGAGCCGTCCGTGTTCGTTAAGACCACCCCCGACGGAGTGGCCCGTGTGCGCAAGTCGAAGGGGAAGTTTGCGTTCCTGCTCGAGTCCACGATGAACGAATACATCGAGCAGAGAAAGCCGTGTGACACTATGAAGGTGGGAGGGAACCTGGACTCCAAGGGCTACGGTGTGGCCACGCCCAAAGGGTCGGCATTAAGGATAAGACCAGCGCGCTGAGTCTCAGTAACGTGGCTGGCGTGTTCTATATCCTGGTGGGGGGTCTGGGTCTTGCCATGACTGTGGCTCTGGTGGAGTTCTGCTATAAGTCGCACCAGGAGACCAAACGCCTCAAACTCGCCAAAAATGCCCAGAACTTCAAAC

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51940 lncRNA upstream 57240 11206316 ~ 11209405 (+) False G35274
TU51941 lncRNA upstream 58191 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA upstream 58191 11206316 ~ 11208454 (+) True G35274
TU51930 lncRNA upstream 78951 11187254 ~ 11187694 (+) True G35267
TU51914 lncRNA upstream 119403 11137052 ~ 11147242 (+) True LOC122346180
TU51991 lncRNA downstream 82258 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA downstream 84479 11384891 ~ 11387096 (+) False G35304
TU51993 lncRNA downstream 84479 11384891 ~ 11387170 (+) False G35304
TU51998 lncRNA downstream 105116 11405528 ~ 11405761 (+) True G35309
TU52002 lncRNA downstream 113629 11414041 ~ 11414688 (+) True G35311
XM_043240932.1 mRNA upstream 7165 11250625 ~ 11259480 (+) True cchcr1
XM_043240691.1 mRNA upstream 17481 11233407 ~ 11249164 (+) True stag2a
XM_043240692.1 mRNA upstream 33651 11223954 ~ 11232994 (+) True acsl4b
XM_043240693.1 mRNA upstream 43825 11218523 ~ 11222820 (+) True cwc15
XM_043240522.1 mRNA upstream 48900 11210377 ~ 11217745 (+) True fam76b
XM_043239523.1 mRNA downstream 3953 11304365 ~ 11322863 (+) True nlgn3b
XM_043239527.1 mRNA downstream 24331 11324743 ~ 11330306 (+) False plp1b
XM_043239524.1 mRNA downstream 24344 11324756 ~ 11330306 (+) False plp1b
XM_043239525.1 mRNA downstream 24927 11325339 ~ 11330306 (+) True plp1b
XM_043238870.1 mRNA downstream 61654 11362066 ~ 11364940 (+) True iqcd
XR_006251083.1 other upstream 204331 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 333482 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 535593 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1148519 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1467287 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 623816 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 948726 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 948726 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1213664 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1402959 12703371 ~ 12705241 (+) False iscu

Expression Profile