RNA id: XM_043239765.1


Basic Information

Item Value
RNA id XM_043239765.1
length 5120
RNA type mRNA
GC content 0.44
exon number 14
gene id gria3a
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11266642 ~ 11303431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataaaacaatgtccACCCAGACTCAAAAAATAGGCCAGATATAACAGATTCTGCTACCATAAATCTTAGAGTTCTGAAATTTCCTATTgttgaacacattttttttaatgacaaacaGGTACTTCACTAGAATAAGATGATTGTAGGAAGTGAGCTCACAAGCATTTGAATATAACCTGCAGTGCAATTAAATTAGCTCACAGCTCTCAATCATTATGCAAAATGAAACAACTTTCCACTTGCTGAAATATAGGACAGATAATTCCATAGGGCTTCTGATGTAtgtggtgtctgtgtgtgtgtgtttgtattatgCATAAGCATTAATTGGTAAGTTTCTTTAATCAAATTCTTGAGCTTACAGCATTGTAATTTGGTATTACTGAGatactaaacttttttttttattattaagatttgttttattttctggtttcattttaaattcgtaaaacttttaagttttatgtaattttttgttgtagttTAAGTTTGTTATTCTTAAAAGAGAAATGCGTGATAAGTGTGTGGTCATTGGATAATAATCATTATCAATAAAGAGGGGggtatcattatgaaataatatatttaatgatatttgttGGACATGGCTGTATGTAtgccacatatatatatgtgtgtattctATATACACttacgcgcacacacacgcacatatgtatgtgcgtgtgtattCTAGTTTGACGCATTTAGGGTTCAGAATTAACTTTTATTGtatactgtttgttttcttttatttagtcaACTTCCAGTGACATTGTACCTGTTGTTCTACATTGTTGAGGTGTAGTGATAATGCAGCGctacatttttttcaatcaacAGCATGTCAatcaaaagaatattttattactttcaaTTAAGTAGCATGTTTTTAGCTTTAAGGCCTCATAGGGGATTGCATAGCATGTGTACTATTTTGCAGAGCTTGCGAGGGCACCCCATtgtttttctcatgtttttccCCATAATATAACTTTTGTGCTTTTCCGCTGTCGTGGGAGTACAGAGGACTCAAAAGACATCAGATCAGCTGCGTTCCATCTGTGAAAAGCCAGCTGCAGACATCTCTATCGTTTCAGTGGCAGGGATGCGTTGTGGGTGTGTTGCATGCTAATCTGAATTCAAAAACGGCCAGTTCAATGTTAAATCCATTTAATTAATGACGCCTGTAAGCAACATTGacttaataataaagaaaaaatattaagatgagCAATTCTTTCTCTTTAGAGCCATTATGTgtgatttaaacaattttttgaattgaattgaattcagACATAatggaattcatttttttttatattcacatgGCTTATCCAGCCATCTGCACATCAAGCTGCAAGTCAAAATTTAGCCAAAAGACAATGTGGTCAACACACATTAGCAGGCATATGGTTcacttatatatatgtgtgtgtgtgtgtgtgtgtatgtgtctccATTCAACAAGAGAGTCGGTCTGATAAATCTGGCACAGAGTACACAGGCATGGCTTGTATGGTCagtatagacacacacacacataggaaATAAGGAGCTGAGGAAATCTGGGTCGCTGTTAGTCAGCCGTATCCAGCTCAGAGCTGTGAgctttcagttttgggtgatgCCAAGGCTGAAAATGTGGAAGCATATCACAATTACAGGCACCTGCAGAGAGCTTTTCTCTTTCAAGGAGATTGTATAATGGCGTAAACGGTctaaatgcatgaaaacattattacagaTGAACACGTTTTCATTACACAAGTCAGTTCTTAGAAGCACAAAAAGACAGCTTGTGTTATCTGAAGCACTCCAGAGACAGacttcacacacacagccaaCAGCAGCGATCAAACAGATCAGaggattaaaaaacaaaacaaaaaaaaaatcacttgtgtagaacaaaatagaaaaacacGCAGGCTACGTGAAAATAATACACGGATAATATGGAATCAACCAGCAAGCGTCTCCCGATGGTTTTTGAGGGAAAGCACAAACCTGAATTGTTTACACTCACGCAGTGCAGGCTGTTTGCTAAAGACCTCAAGTTTACAGCCTGCAGAGATCACCTCTATTCGACATCAAATATTAATCTTCTGTTAGAAATTCCGACCTCGTATATCAAAATCCCTCGTTCTTCCGCGGATAGCGTTATACTATGTGACTAACGCGCGGGTGTGGGACAGTAAAGGTCCGCACCTGTGGGCTGTTGTGTgaactttaattttttgtgtgttgatttttttccccccactgaATGCACACGGGGAATATAAGGGCTTTAAACGACGGCTTTGAAGTGGACTGTTCCCAGGGTCGCCTGCCGCTGTTTCTGAGCTGTATGCGGACTGCGCACGCGGGTCCGCAGTGGCGCTGTTGTAATTTCACGTCACATCAAGTTTGATCAGCGGTCCGATTGGACGATCCGCAGCGCTGTCCTGAATTGAGAGGCTCTCTCGCTTGTTCGCTCGTCCCGCATCCCGAATGCGCCTCTCCGGCGTCGCGTGAGGGAGTCGGTGCGCATCTGGCGTGTTTTGTCGTCGGTCTGGATGTTACGCGTGAGCTGAAGATTTCTAGAGGTCGGCGACAAAATGCGGCGGCGAGCGCACGCCAGCGTCCTGCTCCTGCCGTGGCTGGTGCTGCAAACCCAGGCAGGCTTTCCAAACCAGATCAATATCGGTGGTCTCTTCATGCGCTCCACTGTCCAGGAGCACAGCGCGTTCCGCTTCGCCGTTCAGCTTTACAACACCAACCAGAACATCACCGAGAAGCCCTTTCATCTGAATTATAACGTGGACAATCTGGAGTCATCCAATAGCTTTTCAGTCACGCACGCGTTCTGTTCTCAGTTCTCCAGGGGTGTATATGCAATATTTGGATTCTACGACAGGAGGTCAATGAACACATTAACGTCGTTCTGCGGCGCTCTCCACACCTCCTTCATCACACCATCTTTTCCCACGGACACAGATGTGCAGTTTGTCCTGCAGATGAGGCCAAGCCTCCGAGGGGCGCTGCTCAGTTTGCTAGACCATTACAAATGGGAGAAATTCGTCTACCTGTATGATACCGATAGAGGGTTTTCCATCCTTCAGGCTATCATGGAATCTGCGGTAATGAATAATTGGCAGGTGACAGCACGTTCAGTGGGGAACATAGTGGATCCCCTGGAATACCGGCGCATTATTGAAGAAATGGATCGTCGACAGGAGAAGCGTTTCCTTATCGACTGTGAGGTCGAACGTATTAACAGTATTCTAGAGCAGGTCGTCATCTCAGGAAAGAACAGTCGAGGATATCATTACATCCTGGCTAATCTTGGGTTCTCCAACATGAGTCTGGATAAGGTATTTTCAGGCGGTGCAAATATCACCGGATTCCAGATCATAAGTCCTGATAGCCCAATCGTGCAGCAGTTCCTTCAGCGCTGGGAGCGGCTCGATGAGAGAGAGTTCCCTGAGTCTAGAAACGCTCCCCTGAAGtACACCTCTGCTCTGACACACGATGCCATCCTCGTGATAGCCGAAGCTTTTCGGTATCTGAGACGTCAACGTGTTGATATTTCTCGTCGAGGGAGTGCAGGCGATTGCCTCGCCAACCCGGCTGTACCATGGAGCCAGGGAATCGACATTGAGAGAGCTCTCAAAATGGTTCAGGTTCAGGGAATGACGGGAAATATTCAGTTCGACTCGTTTGGACGGCGATCAAATTACACCATTGATGTTTATGAAATGAAACCAGGAGGAGCCAGAAAGATTGGCTACTGGAATGAATATgagaaatttgtttatatagtgGAGCAGCAGGTTACCAACGAATCCTCCTCTGTGGAAAACAGAACCATTGTGGTCACTACTATTATGGAAGCTCCATATGTAATGTACAAGAGGAATTATATGCAGTTGGAAGGGAATGATCGCTATGAGGGCTACTGTGTTGACTTGGCATCAGAAATCGCAAAGCACGTGGGCATAAAGTACAAACTGTCCATAGTGGCTGATGGGAAATACGGAGCACGCGACCCTGAGACCAAGACCTGGAACGGCATGGTGGGGGAGTTGGTATATGGGAGAGCAGATATAGCTGTGGCTCCTCTCACTATAACCCTTGTCCGGGAGGAGGTGATAGATTTCTCCAAGCCCTTCATGAGTCTGGGCATTTCCATCATGATCAAGAAACCACAGAAGTCCAAACCGGGAGTCTTCTCCTTCCTGGATCCGCTGGCCTATGAGATCTGGATGTGTATTGTGTTTGCATATATCGGTGTGAGCGTGGTTCTCTTCCTGGTGAGTCGTTTCAGTCCATACGAATGGCACCTGGATGAGAATGAAGAGGCGAAGGATCCGCAGACGCCCCCCGATCCTCCCAATGACTCCGGCATCTTTAACAGTCTCTGGTTCTCTCTTGGAGCTTTCATGCAGCAAGGATGCGATATCTCACCAAGatctctgtCTGGCCGTATTGTTGGAGGTGTGTGGTGGTTTTTCACTCTGATCATCATTTCATCCTACACGGCCAATCTGGCTGCTTTCTTGACTGTGGAAAGGATGGTGTCGCCAATAGAGAGCGCAGAAGACTTGGCAAAGCAGACTGAGATCGCCTACGGTACACTTGACTCCGGTTCCACCAAAGAGTTCTTCAGGcGCTCAAAGATCGCCGTCTACGAGAAAATGTGGTCCTACATGAAGTCAGCCGAGCCGTCCGTGTTCGTTAAGACCACCCCCGACGGAGTGGCCCGTGTGCGCAAGTCGAAGGGGAAGTTTGCGTTCCTGCTCGAGTCCACGATGAACGAATACATCGAGCAGAGAAAGCCGTGTGACACTATGAAGGTGGGAGGGAACCTGGACTCCAAGGGCTACGGTGTGGCCACGCCCAAAGGGTCGGCATTAAGgtaaatgtgtctgtgtgttaagtttctttttctttagttaTGTATGTTGTGGTAATGTTTTTATCGTGTTTCTCTCTACAGAAGTGTCACTTAACTTAATAATTTACAGTCcattttacagtgtaatgcCTGTTGCTGTTGATTTCCTACCCCCTTTTTCTTGTCATCCTCCTTCcccttttttgtcttgtttgtccTTTGCTTTGGGctg

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51940 lncRNA upstream 57237 11206316 ~ 11209405 (+) False G35274
TU51941 lncRNA upstream 58188 11204500 ~ 11208454 (+) False G35274
TU51938 lncRNA upstream 58188 11206316 ~ 11208454 (+) True G35274
TU51930 lncRNA upstream 78948 11187254 ~ 11187694 (+) True G35267
TU51914 lncRNA upstream 119400 11137052 ~ 11147242 (+) True LOC122346180
TU51957 lncRNA downstream 2529 11294707 ~ 11303431 (+) False gria3a
TU51991 lncRNA downstream 90492 11382670 ~ 11387096 (+) True G35304
TU51992 lncRNA downstream 92713 11384891 ~ 11387096 (+) False G35304
TU51993 lncRNA downstream 92713 11384891 ~ 11387170 (+) False G35304
TU51998 lncRNA downstream 113350 11405528 ~ 11405761 (+) True G35309
XM_043240932.1 mRNA upstream 7162 11250625 ~ 11259480 (+) True cchcr1
XM_043240691.1 mRNA upstream 17478 11233407 ~ 11249164 (+) True stag2a
XM_043240692.1 mRNA upstream 33648 11223954 ~ 11232994 (+) True acsl4b
XM_043240693.1 mRNA upstream 43822 11218523 ~ 11222820 (+) True cwc15
XM_043240523.1 mRNA upstream 48897 11210376 ~ 11217745 (+) False fam76b
XM_043239523.1 mRNA downstream 12187 11304365 ~ 11322863 (+) True nlgn3b
XM_043239527.1 mRNA downstream 32565 11324743 ~ 11330306 (+) False plp1b
XM_043239524.1 mRNA downstream 32578 11324756 ~ 11330306 (+) False plp1b
XM_043239525.1 mRNA downstream 33161 11325339 ~ 11330306 (+) True plp1b
XM_043238870.1 mRNA downstream 69888 11362066 ~ 11364940 (+) True iqcd
XR_006251083.1 other upstream 204328 11046480 ~ 11062314 (+) False map7d2a
XR_006251113.1 other upstream 333479 10926823 ~ 10933163 (+) False senp3a
TU51709 other upstream 535590 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 1148516 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1467284 9796390 ~ 9799358 (+) True si:ch211-102c2.4
XR_006251021.1 other downstream 632050 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 956960 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 956960 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1221898 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52846 other downstream 1411193 12703371 ~ 12705241 (+) False iscu

Expression Profile