RNA id: TU54131



Basic Information


Item Value
RNA id TU54131
length 277
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G36732
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15028857 ~ 15029133 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGGCACTAAAAGGTAATGACTACTTTTCTTGCCTAACAAGTAATTGTTACTTGTTAAGCGTTTATGGAACAGACTACAAACACCAAAAACTGACTGCACATTTTCCCAATTAGTAATTACACAGTGTGGCAGTATcatactaaaataattacagGCTACTTGTGATTTCACGCTGCAACACAGCAGAAGCGCAGTAAAGCGAAACAATCATGGTTTTCCATtgtaaggtaaaaaaaaaaaagtgttggcccTAAAGGTGCAGTAGCTAAGCGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54072 lncRNA upstream 108916 14918955 ~ 14919941 (+) True G36692
TU54033 lncRNA upstream 210588 14817739 ~ 14818269 (+) True G36657
TU54024 lncRNA upstream 213394 14812473 ~ 14815463 (+) True G36651
TU54029 lncRNA upstream 250482 14777961 ~ 14778375 (+) True G36653
TU54016 lncRNA upstream 301114 14727229 ~ 14727743 (+) True G36644
TU54136 lncRNA downstream 97853 15126986 ~ 15128178 (+) True G36737
TU54149 lncRNA downstream 131164 15160297 ~ 15160709 (+) True G36742
TU54150 lncRNA downstream 134505 15163638 ~ 15163867 (+) True G36743
TU54151 lncRNA downstream 140161 15169294 ~ 15169606 (+) True G36744
TU54153 lncRNA downstream 145264 15174397 ~ 15176947 (+) True G36746
XM_043240365.1 mRNA upstream 12104 15006607 ~ 15016753 (+) True ndufs4
XM_043239466.1 mRNA upstream 29440 14921572 ~ 14999417 (+) True arl15a
XM_043240088.1 mRNA upstream 130032 14880875 ~ 14898825 (+) True cspg4ba
XM_043240089.1 mRNA upstream 130032 14880875 ~ 14898825 (+) False cspg4ba
XM_043239587.1 mRNA upstream 234198 14790866 ~ 14794659 (+) True tmem175
XM_043240846.1 mRNA downstream 141928 15171061 ~ 15173837 (+) True si:dkey-3h3.3
XM_043238181.1 mRNA downstream 279706 15308839 ~ 15311666 (+) True sub1b
XM_043240263.1 mRNA downstream 345004 15374137 ~ 15430440 (+) False arid3c
XM_043240259.1 mRNA downstream 345039 15374172 ~ 15434869 (+) True arid3c
XM_043240261.1 mRNA downstream 345041 15374174 ~ 15434869 (+) False arid3c
TU54012 other upstream 308370 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 376946 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 723553 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 723553 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 736357 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 1454869 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 1454869 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 1457487 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 2335736 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 3813686 18842819 ~ 18847674 (+) True arsk

Expression Profile