RNA id: TU54151



Basic Information


Item Value
RNA id TU54151
length 313
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G36744
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15169294 ~ 15169606 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CACATAATTTGTGTCGTGTGCAGGTGGCCGATTGTGTGATATCCGACAGGAGCATCTCAATGGTGAAGTCTCGCTCCAATTAGGGTCCCCTTTAAGAATTTCATGTCAGCCAGACGTGCAAAGCCACCAGCCGtcatcataaaaacaaaacatgcgacgcatagaaatatatatgtgtatgtattttccCGCCCATTTACAGCCTTaagtttaatgtaaataaacgCAAACGGCAGTGAGTCAGTGCAGAAGAAATGTGGGTTTTGGGTGACAGTTGTGTCTGCGTGTGAGCAGCCCGTGTCATGCAGTAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54150 lncRNA upstream 5427 15163638 ~ 15163867 (+) True G36743
TU54149 lncRNA upstream 8585 15160297 ~ 15160709 (+) True G36742
TU54136 lncRNA upstream 41116 15126986 ~ 15128178 (+) True G36737
TU54131 lncRNA upstream 140161 15028857 ~ 15029133 (+) True G36732
TU54072 lncRNA upstream 249353 14918955 ~ 14919941 (+) True G36692
TU54153 lncRNA downstream 4791 15174397 ~ 15176947 (+) True G36746
TU54142 lncRNA downstream 25922 15195528 ~ 15207426 (+) True G36739
TU54174 lncRNA downstream 106051 15275657 ~ 15295556 (+) True G36762
TU54177 lncRNA downstream 126098 15295704 ~ 15300356 (+) True G36765
TU54221 lncRNA downstream 157493 15327099 ~ 15342864 (+) True G36793
XM_043240365.1 mRNA upstream 152541 15006607 ~ 15016753 (+) True ndufs4
XM_043239466.1 mRNA upstream 169877 14921572 ~ 14999417 (+) True arl15a
XM_043240088.1 mRNA upstream 270469 14880875 ~ 14898825 (+) True cspg4ba
XM_043240089.1 mRNA upstream 270469 14880875 ~ 14898825 (+) False cspg4ba
XM_043239587.1 mRNA upstream 374635 14790866 ~ 14794659 (+) True tmem175
XM_043240846.1 mRNA downstream 1455 15171061 ~ 15173837 (+) True si:dkey-3h3.3
XM_043238181.1 mRNA downstream 139233 15308839 ~ 15311666 (+) True sub1b
XM_043240263.1 mRNA downstream 204531 15374137 ~ 15430440 (+) False arid3c
XM_043240259.1 mRNA downstream 204566 15374172 ~ 15434869 (+) True arid3c
XM_043240261.1 mRNA downstream 204568 15374174 ~ 15434869 (+) False arid3c
TU54012 other upstream 448807 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 517383 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 863990 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 863990 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 876794 14290420 ~ 14292500 (+) True G36495
TU54916 other downstream 1314396 16484002 ~ 16560732 (+) False G37227
TU54918 other downstream 1314396 16484002 ~ 16560732 (+) True G37227
TU54920 other downstream 1317014 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 2195263 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 3673213 18842819 ~ 18847674 (+) True arsk

Expression Profile