RNA id: TU54502


Basic Information

Item Value
RNA id TU54502
length 2684
lncRNA type sense_over
GC content 0.36
exon number 5
gene id cenpv
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15703533 ~ 15709430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGAGACACATCGACCTCAGACATGTTGCCTGCCGTATCTGTTGCAGCAATGTAGGTCATTTTCTCTGGGGAGCGTGATGGTCTTGTGAAACACACCGGAGGCTGTCACTGTGGCGCGGTGCGTTTTGAGGTGTGGAGCTCTCCAGATTTACACGTGTTCAATTGCAATTGCAGTATTTGCACAAAGAAACAGAATCGCCACTTCATTGTGCCAAAATCCCAGTTCACCTTGCTGCAGGGATCAGACAACATAACCGCGtacacatttaacacacacGTGGCCAAGCACACATTCTGCAAAACGTGTGGCGTCCAGAGCTTCTACATGCCACGTTCCAACCCTGATGGATTTGgTGTGGCACCTCACTGTTTGGACCCTGGAACAGTGAGCAGTGTCACTGTAGAAGACTTCTTTGGACAGAACTGGGAGGAAAGCATGCAGAAGCATCAAACTATAAGAAGtatgtcaaaaacaacaacagacacATGACGTCTATCTATGTTTCTATCGCCCAGTTGAGCCCTATGACTTAATTGTACTCTCCTGCTTCTCAAGGCAGTTATTActgatatattaaaatcatgaaTCAAACTTTAACTTTTGAGACACCTACTGTAATGTACATCAAATCActtaacaaatatacacatctACAAAAAGATACTGAaccaaaaatattgattaatcaATTTGTATACATGATACAGGTATACACAGGTAATCTCCCCCTAAAttacatgatttttacttaaaggaatagttcacccaaaaaatgtaaaattatggcatattttactcacccccaagccatccaagagtatatgactttcttggctgacctctgacttgACGTTATGTTATACATCATACAACTCAGATTgcgttcgtctgaaagaagaaagtctcATACACccaggatggcttgggggtgagtaaaatatggcatcattttaatttttaggtgaactattcctttaaggaatGTATGGacatataatatgaaaaaacatTGCCAAAACTGAATGGAAAACATAGTAACAGACATTTGTGAGAAGGAGATGAAGATTTTGAATGATATATACCCCATGTTTGTATTGTGTTAGCATTTGTTTGAGAGTGTCAGATATGAGGaaaactaattaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatgtccATCGTTTTTCTctttatcaattttattttaaacaaaattattacattGCTCTACATTAGAAGTCATTACAGAATATACTAACAGAGTTACAGACTTCACTCAAGGAAATCAGAAAAACATGTCAGTTTTGAAAACATACTGAATCATAAGATTTGGTACAGTACTTGTTTATCCATTTGGAACAGTGCTTTTCTTGGAAGTCtactttaataaatcaataacatTAACAACAACATCTAATAACAACagtaacagaaaatgtaaacgaTGTACAGAATCACATTTCGTGCTTCACCACCTTTAAACTCAAAGGCACAATCTGTGTTTTGGATTTAACTACTCAAATAAAGCGCTTAAGTCCCCTAAACCTCCCAGGAAATCTGGCTTTCAGAACATTGTATTGTTTGGTATAAAAGTCTCTAAGGTTCATTATACCAGCAGTTCTCCGTTAGTGTCTGTAGGCTGGATATGCTGACTGAACCTTATTGATATATTGTTGTAcagtctttatatatatatatatatatatatatatatatatatatatataatataaatatataaacaaattaattataaacaaaGTAAACCTTTGTTTAAAATTTCAGTGCATAATTTTAGTCCTACATGGACAGGAACAGTGCCCAAGACAATCTAAGCTAATAAATCTTCACATTCTTTGTTTCCACGGTGATGGCCTGGAATGTGTTTACAAACATGTAGCGTGAGAAAAGTATGTAGAGTCGGCGAAACCACAGCAGCTGAGAGCGATGACAGAGCATGGCTTTCTGAGGAAGGAAGAGGAGGACAAGAGTAGATAACTGTATGGAGATATATCTTTTTTatatgacatgttttaagataacctaaagaaaataaatagatgaaCTGACTCAATATGACAAACACAGCAGGGCTGAACGTTCAATCATCTGCACGCTACTGTAAAAGGAGCCAGACTGGTAAGACCAGTTCAGGCTTCGGCGGGTCAGACAGGATTAGTTCATGTTCACAGTAAAGGTTCAAAGTACCAATGTGTTAATCAGCAACATAGAAAAACATGAGCTTTTCAGTTATGCTCGTAAGTTATGAATGCTCTGTATTTATTCGTAGTCATTAAGTGTCTCGTTTGGGAATACATCTGAAAACAGTCGAACTGTAAAACTTGCAGATTGATGCCAGAAAGGTTTGTAAGTAATATCTGATCATTTCTAATTACTTGTACTGATCCAGGGCGTGTCGAATTTCAGTTCAGGAATCATTAAAGTATAATCAGAGTGTAAGCTCTTTGTTTAAACACGACTGATGATGCACCTTGGCACGGTTATACTCATCCTGTCCAATGATGCAGCAGAAATCAGAGGGGAGGAGCCAGCTGATGGGCAGCTCTAGGACTGACACGTACTTTCTAAGTAAGCTGATGGAGTGAAGAGAGAAGATCTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54475 lncRNA downstream 138490 15564098 ~ 15565262 (-) True G36969
TU54473 lncRNA downstream 141389 15562148 ~ 15562363 (-) True G36968
TU54472 lncRNA downstream 141674 15561722 ~ 15562078 (-) True G36967
TU54241 lncRNA downstream 534394 15169047 ~ 15169358 (-) True G36811
TU54112 lncRNA downstream 798131 14905385 ~ 14905621 (-) True G36714
TU54544 lncRNA upstream 4287 15713675 ~ 15713975 (-) True G36986
TU54670 lncRNA upstream 19815 15729203 ~ 15729893 (-) True G37067
TU54680 lncRNA upstream 33352 15742740 ~ 15808380 (-) False fam222ba
TU54682 lncRNA upstream 34326 15743714 ~ 15755392 (-) False fam222ba
TU54686 lncRNA upstream 38134 15747522 ~ 15749497 (-) True G37076
XM_043240392.1 mRNA downstream 19316 15616601 ~ 15684436 (-) False ncor1
XM_043240405.1 mRNA downstream 19316 15616601 ~ 15684436 (-) False ncor1
XM_043240399.1 mRNA downstream 19316 15616601 ~ 15684436 (-) False ncor1
XM_043240400.1 mRNA downstream 19316 15616601 ~ 15684436 (-) False ncor1
XM_043240394.1 mRNA downstream 19316 15616601 ~ 15684436 (-) False ncor1
XM_043238308.1 mRNA upstream 17456 15726844 ~ 15728006 (-) False emc6
XM_043238745.1 mRNA upstream 47820 15757208 ~ 15808319 (-) False fam222ba
XM_043238744.1 mRNA upstream 47820 15757208 ~ 15800588 (-) False fam222ba
XM_043238743.1 mRNA upstream 47820 15757208 ~ 15799138 (-) True fam222ba
XM_043238897.1 mRNA upstream 112481 15821869 ~ 15838717 (-) True flot2a
TU54482 other downstream 128935 15573111 ~ 15574817 (-) False alkbh2
TU54484 other downstream 128935 15573258 ~ 15574817 (-) False alkbh2
XR_006251075.1 other downstream 336339 15350016 ~ 15367413 (-) False npr3
XR_006250970.1 other downstream 395312 15296018 ~ 15308440 (-) False zfr
XR_006251010.1 other downstream 438807 15205951 ~ 15264945 (-) False pdzd2
TU54667 other upstream 15639 15725027 ~ 15727910 (-) True emc6
TU54666 other upstream 17394 15726782 ~ 15727910 (-) False emc6
TU54665 other upstream 17467 15726855 ~ 15727910 (-) False emc6
TU54668 other upstream 17467 15726855 ~ 15728108 (-) False emc6
TU54705 other upstream 136648 15846036 ~ 15847036 (-) True LOC122345695

Expression Profile