RNA id: TU54917


Basic Information

Item Value
RNA id TU54917
length 1020
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G37227
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 16474708 ~ 16560732 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttggcaataagctttttatttaaacattaaggCAGTGTCTGTTTTTTTCCGTTTAATTTTTACACTGCTATCCACAAAGCTTGCTGGTGGCCATGTTGAAATACAACAGTGTGAATATCAATCTTGCAGCAAATCACATAAATATGTACATCCTTTTAAGGTCTATTTACTCCTCCTCGCTATAATACAGTGGGtcttaatacaaaaaaaaacgaaacaaacaaaaaaaacaatatgcacAAAATGGTTGTACAAAAACAGATGCCACCCAAATACCCACTTAACCTTTCCAATCTTAAGAGGGGTGATGATTACCGCTGTTTTCCCATCTCTCTCCTCTTAATTTGTTATAAATCTCAGCTTCATTTACGTTTATCAGTTACAAATGAGAATGCCTCCTCATCTAAGGAAAGTGCAATACTGTCCTCAGTAAAAAGGTCAAACAAACAGTCAATATAGAGGAAAGAGGGCTCGCTATACAAGAAAACACTGAACTTTAGAGTGACTTGTCCACTAAATACAATACTGTCTGGAGTGATATGTCAGAGTATGAATCTCAAAATCAGAGAAGAGCATTCTGGGATGTCTGTGTAGATgttatggtttgtttttttgttgtttttttcaaaaagtataGCTACTGTTCGCACACCCCGTTCAGGGATCTTGATGAGAGTGTATTTAAGATTGAAGTGACTGAAGATAAAGCCCTATTTTACAAAACCACACTAGGTAGTGCACTAAAACTGTCCTCGAACAccaaagcaacaacaaaagcCCCCACCGGTTAAAACCCACTGCTGAACTTTGACGTTTCATCTTTTAATCAGCTTCCAAAAATATCCCCAAAATCTGGAGATTACAATGAGCATTGCAGTTTAAACTGTTAAAGATACCTTTTTATAGTAAAACcatgtgacaaataaaagtcaaacaatatgaattaaaacatttcattatatcTAATATGCATGCAAAGCAATTAGTTACCCCACCGCTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54896 lncRNA upstream 79146 16391837 ~ 16395562 (+) False LOC122345998
TU54816 lncRNA upstream 377703 16095985 ~ 16097005 (+) True G37155
TU54774 lncRNA upstream 420700 16053246 ~ 16054008 (+) False G37123
TU54772 lncRNA upstream 420811 16053246 ~ 16053897 (+) False G37123
TU54775 lncRNA upstream 420889 16053032 ~ 16053819 (+) True G37123
TU54978 lncRNA downstream 175406 16660521 ~ 16660743 (+) True G37260
TU55011 lncRNA downstream 302715 16787830 ~ 16812417 (+) True G37286
TU55017 lncRNA downstream 342010 16827125 ~ 16827476 (+) True G37291
TU55036 lncRNA downstream 404082 16889197 ~ 16889977 (+) True G37308
TU55085 lncRNA downstream 865476 17350591 ~ 17350922 (+) True G37330
XM_043240214.1 mRNA upstream 64788 16400432 ~ 16409920 (+) True LOC122345769
XM_043240613.1 mRNA upstream 79410 16391797 ~ 16395298 (+) True LOC122345998
XM_043240348.1 mRNA upstream 85064 16379355 ~ 16389644 (+) True LOC122345865
XM_043238291.1 mRNA upstream 222936 16144894 ~ 16251772 (+) True tmem8b
XM_043240449.1 mRNA upstream 385795 16087941 ~ 16088913 (+) True LOC122345915
XM_043240931.1 mRNA downstream 58720 16543835 ~ 16554564 (+) True LOC122346216
XM_043240527.1 mRNA downstream 550680 17035795 ~ 17162890 (+) True edil3a
XM_043240528.1 mRNA downstream 550681 17035796 ~ 17162890 (+) False edil3a
XM_043240526.1 mRNA downstream 550685 17035800 ~ 17162890 (+) False edil3a
XM_043238282.1 mRNA downstream 744279 17229394 ~ 17253899 (+) True LOC122344732
TU54012 other upstream 1754221 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 1822797 14647489 ~ 14651911 (+) False fgf5
XR_006250972.1 other upstream 2169404 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other upstream 2169404 14300043 ~ 14305304 (+) False LOC122345142
TU53776 other upstream 2182208 14290420 ~ 14292500 (+) True G36495
TU54920 other downstream 1505 16486620 ~ 16561741 (+) True G37228
TU55097 other downstream 879754 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 2357704 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 2357704 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 2453698 18938813 ~ 18940895 (+) True G37626

Expression Profile