RNA id: TU55085


Basic Information

Item Value
RNA id TU55085
length 332
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G37330
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17350591 ~ 17350922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttatattctttcaGATGTCCGAGAGTttttttgaagctccataaattgtATATACTTTTGTAGAACTAACGTCTATGCCTTCAGGGGGTTAACCCATGTCTTCTAAAGCAGATCAGTGtcttttgtgacaaaaaaaaaattatattttttaaactataaacaGAAATCACTGACATCGATCGTGTTCGAGAGGGGGTTGAGttcggcttcttggctgacctctgaacATGTTTTGACGTAAGCTGCATTTGTAGCATAAGCTAAGAAGAGATTAGACGAATGAGGATAGAACAATACTAAACGCAGATAACTAATTAAAAGTCGAAAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55036 lncRNA upstream 460614 16889197 ~ 16889977 (+) True G37308
TU55017 lncRNA upstream 523115 16827125 ~ 16827476 (+) True G37291
TU55011 lncRNA upstream 538174 16787830 ~ 16812417 (+) True G37286
TU54978 lncRNA upstream 689848 16660521 ~ 16660743 (+) True G37260
TU54917 lncRNA upstream 865476 16474708 ~ 16485115 (+) False G37227
TU55096 lncRNA downstream 234 17351156 ~ 17353096 (+) True G37333
TU55087 lncRNA downstream 3684 17354606 ~ 17357759 (+) True G37331
TU55088 lncRNA downstream 3684 17354606 ~ 17355806 (+) False G37331
TU55156 lncRNA downstream 175120 17526042 ~ 17527444 (+) True LOC122345691
XR_006251028.1 lncRNA downstream 242946 17593868 ~ 17614996 (+) True LOC122345748
XM_043239182.1 mRNA upstream 22177 17319860 ~ 17328414 (+) True LOC122345236
XM_043239181.1 mRNA upstream 22177 17319860 ~ 17328414 (+) False LOC122345236
XM_043239178.1 mRNA upstream 22177 17321464 ~ 17328414 (+) False LOC122345236
XM_043239177.1 mRNA upstream 22177 17321466 ~ 17328414 (+) False LOC122345236
XM_043239180.1 mRNA upstream 22177 17321661 ~ 17328414 (+) False LOC122345236
XM_043238683.1 mRNA downstream 13927 17364849 ~ 17372859 (+) True LOC122344991
XM_043240455.1 mRNA downstream 22351 17373273 ~ 17374248 (+) True LOC122345919
XM_043238292.1 mRNA downstream 23930 17374852 ~ 17377009 (+) True LOC122344741
XM_043240097.1 mRNA downstream 175102 17526024 ~ 17527353 (+) False LOC122345691
XM_043239052.1 mRNA downstream 203488 17554410 ~ 17586352 (+) True rasa1a
TU54920 other upstream 788850 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 789859 16484002 ~ 16560732 (+) False G37227
TU54918 other upstream 789859 16484002 ~ 16560732 (+) True G37227
TU54012 other upstream 2630104 14718532 ~ 14720487 (+) True G36640
TU54000 other upstream 2698680 14647489 ~ 14651911 (+) False fgf5
TU55097 other downstream 13947 17364869 ~ 17369768 (+) False LOC122344991
XR_006250965.1 other downstream 1491897 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other downstream 1491897 18842819 ~ 18847665 (+) False arsk
TU55500 other downstream 1587891 18938813 ~ 18940895 (+) True G37626
TU55503 other downstream 1587891 18938813 ~ 18940895 (+) False G37626

Expression Profile