RNA id: XR_006251027.1


Basic Information

Item Value
RNA id XR_006251027.1
length 3837
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122345727
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18350425 ~ 18361161 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGGCGAATCGTCCAGCTGCCAGTGGTGGCTCTGCTGAACGCCTGATTAAGGTGGCCGTCACTGGGCACGAGGAAAGCAGGTACTCAAAGACGGGCAGCAGTGAGATATCTGCAGGCTTTTGGTGGAAAAACACATGGTTTGATTATCCTTATTGATACACACACCCACGCCCATTAAACGTAAAAATAGCACACGCATCTCTGTTTACACGTCACCCTCTTGTACTGTACGTCGAGCGTCCCTCTATCAGTTCTATCTGTCTGCAAAGGAGAAGAATGCAGCCGTCATTCCTAAACACACATTCCTCTTCACCTCTTAAAACATCAGTTTTTGATAAATATAGGcagagcttttatttaaaatctgcGAAACAGCATGTTTTCAAAAGCGAAAGAGGACCGATTACAGACAGCTGTGGCACTCCAAATGTGCCTCTCCACCCCACGGATAGGACAGCAGTTAGTGAGGGACTTCCTGCATGGAAAGCTGTGTATGTTTTCCTTCAGTGAATCGAACATCCTGCAGATCTTAAATTCCAGTCAGCAGTAAACTCCCTGACCTCTGAGCACAAAATTAGGCACATCATACAAGCAAAAGACAAGACGGAAAGGAAGGACtgcaaaacagaacagaaatataGAGATAAAAGGAAGATAGAGATGTGAGAGTGAGGGATAATTCAACCTTACACATCTTTTGAGTTgcattttttcaaatgattcattttatgaAACGGAAACTAGTATACGTGATTAATTATATgagctattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacagcattaTATTTTTAGCTTGTCAGTTTCTAAAGTATACAAATGATTTCTTTCAATTTATTCCTCACCTGACCATATATTATTTAGtcaaattacaaaatgtttttttttttttatttatgatgttgaatgtttaaataaatccagTTCCTTTATTTTACAACACGGAACACATATTTTTGGTTCTGTGACGACAAACATTTTTCGCACTATAGCTAATCACAGGATAATGTGTGACAATGAACAAAGCAACCCATATAAATAGATCTAGTCATCGTATTGTAATGCTCATGAACATCCAGGCTCTTTTTACATATATGTGAGATCCATTTGTTTATTATGAggcataaatgcaataaaaggaATGATCTTGTGTTATTGTATTATACCATTCTATGTCTGATAACACAGTGATGTAAACAGCCATGAAAGTGTCAGATTTCATCTTCTATTACATGGACAGGGTTGTCAGTTACAACATATGCGGTGAACCCTATCTGCCAATGTGTTTATTGAGCTATTATCAATTGACTGATGAAACAAACTACTCACCAGTCAACATATGTTACTTATTTgctggatttatttgattttaaaccaTGTGTTTTCCGTTTTGAAATGATTATGGAGGTTTGCGACAGAGCATTCTCTGCAAATCACAAACATTAGAGTTTTGGTGCAACAATATGATTTTACAATTGTATACTTTGAGTGGATTTTCCTGGGGGTGACgagatatttctttttttataaaatacattttcctacAACTAACACGGGAATAAAATATATGCCTTCTGTGTCCGTACACCACAGCCATATAGCCATATATAGCCATTTACTGGCTATATGTTAAGTGTTTTGACCTTCTTCCTCTTCTCATGAAATACTCCCATATAGCCAGTCATAtcagaaaaaaagcttaaagGTAAGTGGTCATCATTACCTTGTAGAGCTGGTTCTACCTTACGTTTACAGGTGCACAGCAATTGATAAATCCAGAAATGCcatactgtaatataatgtataatgtattcctctatgtatgttttaatgtacaaaatgtagAATGTTTATGTTCTGACCAGTGTTGACATTTGACATATCTGAATGCCtctaaataaagtattttggAATAAGtgcatattaacattttttcttttgtttcttatttccTGTGGTTCCCTTTGTCTGAAATCATATGCTTTATCTGGAGTATTATTGTGTACAGCTCTCAAAGGACAGAGTTGTTTCCCAGAGCAGATCACATGATCCTATCATGTGCAGAGAGGTTGTTCTCCGATTGGTCGGTTACTCCACTTTGCCACATTTGCACAtcactttttttggtttgttttacaGACTGGGGGCTGGAAGGTAAAGTTATATATAGCGTTAATTTTTATATGTGGTTATAATTGTGCACCCTCCCAATCATTTCCCTTATTTTTGTTGGTAATGACGCTTGCCCTGCTTCGGTGAACTGGAGGAGAGGCCAAGGAAATCCCAGTGCCTAATCACTCGAACAATGTGAGCGAATGTGTAGCTTTCTGAACAATGCGACACCACATGATGCGGTGGGTGGAAAAGAAATCTCAAAGCCCAAGCTCACTCTCCCTCCGTCATATTCTTTCTCGACTTTTCAGCTCTCCTTCACGTACCATGTCTGTCAGCAACGTCTTTACAGGCTTTTAGGTGGTGTCGCTGATAATCAAGAAACAGTAAACACCACAGACAGTCGGCTATGGTGCGACCTTGGAACACGTCCCATGCAATGACCATTATAAATGCTGCGTCTTTCATCTCTTTCGCTTTAGACGACGGGCTGCGGGAATGCAGCTGTGTGGCGGGTGCCACCAGACTGTTCATGTCTTGCCtcgtgtgtatgtgcgtgtctgtgtgtgcgagCGAGCGATCCCTTGGGGCTCTCTCCCTCAGCCCTGGCTCCCTGATTCGGCAGAATGCCAGCGTTTGCTGCTTCCCACCTCCTTCCCGGAGACTCCCGGCCATAATAGACGGTAATGGCCTAAGACAAATCAACCCGTTTCTTGTAAAAATAGCAGCAAATAACCCCTGACTTTGCCTCACGAGCGTAAACCAGGGAGAAGCTCGATTCTGACAGCCACATTCACAGCGGGCATTAACCCCAGGAGAAAGCTCGTGCTCCACTTGAACAAAGCCATAAGTCTTGAATACTTACATCCCCCACTCACAGCTCAGAATAGATTGGTAATGACCGACTGTCTGGCTGTGCAGGTTATATGCGCTTCGCCTCGGCCAATCACAGTGCCCTTACTCCATGTTTACAACAACATCCTACCAGGCAACAGTTTCTGTGTATTAGTTGAACATATGGATATCATATTTAAGCACCACAGTGAGAACCCTAACAAATGTAGCCTATAAACACTCACCCCTGACTGTTTTTGCTAGCTCGGGGCCTGCCGTTGTGATGTTTCAGGCCTGGGCAGAAGATGAGAGAGTGTGTGGAGCTCTGGCCAGGACCCTCTATGTGGTCTCTAAAGGGCCTGGAACACataacatgcacacacacacacacacacacacacacacacacacacaatgaaaaaagTGTGCTTTCAGAACTGATGGGCATTCTCAGTCAAGTGgtgtaataaaatgttctgttaaAAAATCGGAATGCAGTACTTTGAATGAAAAGTAGGGAATTGTCTTGAATGGTCAATTCAGGTTATGAAGTCCACTTGAGCATGATTGGCAAAATGtaaatcaaaatttaaaaatcaagtAAATCATATTTACATGACCCACCtgggtttgaatgttttgtaatgaataTGCATTGCTTTTTAGTATTACAAAATTGTAAACTTCTTTCCTCTTCTAAAAGGTCCTCTTCTTTGCAAGGTGTTAAaattttgatataaataaattctgtgatgccatttatgtttttgtcttataCTCTTTTTTCATTCTATGGcataatagtttaaaatgtaaacaataaacatttacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55291 lncRNA downstream 337637 18012391 ~ 18012788 (-) True G37470
TU55292 lncRNA downstream 340148 18009515 ~ 18010277 (-) True G37471
TU55290 lncRNA downstream 343791 18005570 ~ 18006634 (-) True G37469
TU55286 lncRNA downstream 376167 17973787 ~ 17974258 (-) True G37465
TU55285 lncRNA downstream 377844 17972178 ~ 17972581 (-) True G37464
TU55419 lncRNA upstream 4151 18362413 ~ 18365467 (-) True G37565
TU55427 lncRNA upstream 12261 18370523 ~ 18370817 (-) True G37569
TU55428 lncRNA upstream 13946 18372208 ~ 18373250 (-) True G37570
TU55429 lncRNA upstream 15055 18373317 ~ 18391648 (-) True G37571
TU55526 lncRNA upstream 455302 18813564 ~ 18813771 (-) True G37637
XM_043240295.1 mRNA downstream 304038 18043514 ~ 18046387 (-) True LOC122345814
XM_043238311.1 mRNA downstream 308363 18037587 ~ 18042062 (-) True LOC122344755
XM_043240294.1 mRNA downstream 315453 18027221 ~ 18034972 (-) True arrdc3a
XM_043240157.1 mRNA downstream 446090 17899764 ~ 17904335 (-) True lysmd3
XM_043240158.1 mRNA downstream 454492 17893508 ~ 17895933 (-) True mblac2
XM_043240144.1 mRNA upstream 27711 18385973 ~ 18534507 (-) True fam172a
XM_043240145.1 mRNA upstream 27711 18385973 ~ 18534386 (-) False fam172a
XM_043240146.1 mRNA upstream 27711 18385973 ~ 18534216 (-) False fam172a
XM_043240147.1 mRNA upstream 27711 18385973 ~ 18533997 (-) False fam172a
XM_043240810.1 mRNA upstream 177343 18535605 ~ 18648678 (-) False kiaa0825
TU54999 other downstream 1637258 16687260 ~ 16713167 (-) True G37277
TU54996 other downstream 1637258 16687415 ~ 16713167 (-) False G37277
TU54976 other downstream 1717304 16596855 ~ 16633121 (-) True G37258
TU54936 other downstream 1971930 16376508 ~ 16378495 (-) False LOC122344728
TU54865 other downstream 2093686 16254149 ~ 16256739 (-) False LOC122344710
XR_006251078.1 other upstream 1509124 19867386 ~ 19935576 (-) False kcnt1b
XR_006251077.1 other upstream 1509124 19867386 ~ 19935576 (-) False kcnt1b
XR_006251079.1 other upstream 1510552 19868814 ~ 19935576 (-) False kcnt1b
TU56161 other upstream 1693397 20051659 ~ 20055798 (-) True G38058
TU56325 other upstream 1767327 20125589 ~ 20127390 (-) True G38140

Expression Profile