RNA id: TU55500


Basic Information

Item Value
RNA id TU55500
length 1987
RNA type TUCP
GC content 0.44
exon number 2
gene id G37626
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18938813 ~ 18940895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGaatccttttttttatcttttgtaatAACAAGACCTCATCTTCATCACCATTGTTATCTGTGGGCAACTCACATTTCACAGAAGGGTTTATAGTGGCCAAAAGGGCTGGTAAAGTAAAGCACGACATGAAACGTGCCTTCAAAAGCTGGTATGCTGGATTTGAGGCAAACCTTTCTGCAATCATTTTGCGGATGGCAGCTACTTGAGCTGCTTCCTCCCTATAGTTTTGATACTCAACTGGCAAGATATTCACTGCATTTGCAAGCAGAGATTGTTTAACTTTGAGCAAAGAAGTCAGTGTTTTGATGCTGGCGGCAGATGGTGGAAGGTATGGCAAAGACATCTCTAAATGAGGTAGTGGAATTCCACCTTTTCCATTTATCCAGTCATCTACTTCAGATGATTGCTCAGGGAATATCAAGTGAGTATTAAAGCTAACAACATCAGAGGGAATATCAGAAAGAGGGAGTAATGGCTTACTTAATGTTCTGATTTGAGGTATTTCTGATGGAGCAACAATCTGGGGTGAAGAAGCCACGATCTGAACTGATGGAACCACAGGCTGAGGTGGTGGAGCCACAATCTGAGGTGATGGAGCCCCAATGCGAGCTAAAGGAGTCACAATCTGAGGTGATGGAGTCACAATCTGAGGTGATGGAGCCCCAATGCGAGCTAAAGGAGTCACAATCTGAGGTGATGGAGCCACAATCTGAGGTGATGGAGCCACAATCTGAGGTGATGGAGCCCCAATGTGAGCTAAAGGAGTCACAATCTGAGGTGACCAAGCCACAATATGAGCTAATGGTGCTACAATCTGAGGATATTGAGCTATAACCTGAGGTGAAAGTGCAATTGGTGTTCTAGAAGCAGAAAGTGGGCTCAATATTGTGCCGGGCAAAgctttttgttggaggacagttGGCAGCTGATTAGTTCTCACAAGAACGCAGCCATTTTCAGTAACACCAGGAGACTTTGCCACTGAAACATTATTTGTTGACTTCAGAAAGACTGGTGAACTAGACACAGGTGGCACAGTCAAGGGTACTtgaagaaaactaaaaacagcAGGAGATACTCTGGAACCAGTTGATGTAGATGTCTGATACTGCTTTACAATACATTCCTCTGAAGGGGAGTCTGAGTAGCTCTTCATAGCATCCTTTTTAATAGGTGTCGGGGATAACATCTGAGAACTATGAAGCTCACTTTTGCTCTGTACTATGGTAGAAGTAGATGAAAGAGGTGTCTGGTTGCCATTGGGGTTAATGTTGTCAGAGGGAGTCTTTAGGGTATCTTTGGAGGCATTTGAGACTGAAGAATGTAAAAGGGCAGGACTAACAGAGGAAGGAGCAACAACCAGTGCAGATGATGATGGGTATAGATTAGTTGAAACAGATGGACTACTACTGTTATTCAGGAAGGAACTATTTGGCATAGTTAGTGTCTGGTTGCTTGGGATATTAGCAGAAAGTGGACCAGTTACTTGTACCAAATTGGTGGTAAAAATCCAATTTATTGGCTGCGTCTGCAATGTAATATTTGGAAAAACAACATTCAGTTTTTCTTGATTTCGTTTTGGTGACTGTTTTTTCCTATCTTTAGCTTTAGTTTCTTCCATTAGGGCTTGGCCTTTCTCAGTAGGTTTGCGAATGCGTTTTGCAGATTGGATGCTGTTTGATTCCTCTAAACTTGGGGTTGAGGCCATGACAGGTTGTGCAGGTGCAGTCGGCTGCATTAGCGGCATAGGATTCTGTGATAAAACTTGTGGTGCCGACTTAATTAGTAAAGGCTGCACTGCCCTCTGCTTGTTTGGCTGTGTAATGACAAGAGTCTTGGGTTGAACCAAAGTTGAGGTTGTCATCTGCATGACTGGCAGTTGAAGAGAATTGAGAAGAACTGGCTGCAGTGGAGGTGGATGTTGAGGAGGTTCTGCAGGTCTCATGTGCTGAGCTTTCATTTTTGCATCCTTAAGAATGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55492 lncRNA upstream 11811 18925437 ~ 18927002 (+) True G37620
TU55491 lncRNA upstream 13380 18925210 ~ 18925433 (+) True G37619
TU55490 lncRNA upstream 14137 18923302 ~ 18924676 (+) True G37618
TU55385 lncRNA upstream 188758 18678596 ~ 18750055 (+) True G37540
TU55333 lncRNA upstream 548747 18373499 ~ 18390066 (+) True G37497
TU55663 lncRNA downstream 347121 19288016 ~ 19288328 (+) True G37734
TU55830 lncRNA downstream 653175 19594070 ~ 19647075 (+) True G37843
TU55986 lncRNA downstream 818816 19759711 ~ 19760204 (+) True G37951
TU55992 lncRNA downstream 853548 19794443 ~ 19867398 (+) True G37956
TU55996 lncRNA downstream 932347 19873242 ~ 19874144 (+) True G37958
XM_043240126.1 mRNA upstream 17298 18914683 ~ 18921515 (+) True pomt1
XM_043240092.1 mRNA upstream 24733 18900511 ~ 18914080 (+) True LOC122345689
XM_043238315.1 mRNA upstream 47507 18890017 ~ 18891306 (+) True gcnt4a
XM_043240607.1 mRNA upstream 48878 18885057 ~ 18889935 (+) False LOC122345996
XM_043240608.1 mRNA upstream 48878 18885057 ~ 18889935 (+) True LOC122345996
XM_043239697.1 mRNA downstream 12482 18953377 ~ 18961721 (+) True ubac1
XM_043240648.1 mRNA downstream 21427 18962322 ~ 18999279 (+) True msh3
XM_043240647.1 mRNA downstream 21429 18962324 ~ 19014100 (+) False msh3
XM_043239619.1 mRNA downstream 74416 19015311 ~ 19068269 (+) True rasgrf2b
XM_043239621.1 mRNA downstream 74416 19015311 ~ 19068269 (+) False rasgrf2b
XR_006250965.1 other upstream 91139 18842819 ~ 18847674 (+) True arsk
XR_006250966.1 other upstream 91148 18842819 ~ 18847665 (+) False arsk
TU55097 other upstream 1569045 17364869 ~ 17369768 (+) False LOC122344991
TU54920 other upstream 2377072 16486620 ~ 16561741 (+) True G37228
TU54916 other upstream 2378081 16484002 ~ 16560732 (+) False G37227
XR_006251073.1 other downstream 21427 18962322 ~ 18999279 (+) False msh3
unassigned_transcript_958 other downstream 477203 19418098 ~ 19418169 (+) True trnap-ugg_3
TU55947 other downstream 766443 19707338 ~ 19709926 (+) False nrarpb
TU56198 other downstream 1202388 20143283 ~ 20151585 (+) False lix1
TU56199 other downstream 1207526 20148421 ~ 20151585 (+) False lix1

Expression Profile