RNA id: TU56081


Basic Information

Item Value
RNA id TU56081
length 232
lncRNA type sense_over
GC content 0.56
exon number 5
gene id col27a1b
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19967577 ~ 20035380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTCACCCGGCAAGGCACAAAATGGAATAAagGGGGACCCTGGTATATTAGGGCTACCCGGACTACCCGGTCAAGCTGGTCGGAAGgGACAGCAAGGCCATCCTGGTCCATCTGGCCAACCCGGAGATCAAGGAGAAAGAGGACTGGATGGAAGCCCGGGTGCCAAAGGTTATCCTGGCAGGCAGGGTTTGTCAGGGCCTATAGGAAATATGGGACCAAAAGGTGTACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55996 lncRNA upstream 114140 19873242 ~ 19874144 (+) True G37958
TU55992 lncRNA upstream 120886 19794443 ~ 19867398 (+) True G37956
TU55986 lncRNA upstream 228080 19759711 ~ 19760204 (+) True G37951
TU55830 lncRNA upstream 341209 19594070 ~ 19647075 (+) True G37843
TU55663 lncRNA upstream 699956 19288016 ~ 19288328 (+) True G37734
TU56191 lncRNA downstream 129149 20127401 ~ 20392624 (+) True G38082
TU56205 lncRNA downstream 172722 20170974 ~ 20552306 (+) False G38091
TU56207 lncRNA downstream 172722 20170974 ~ 20552306 (+) False G38091
TU56208 lncRNA downstream 172722 20170974 ~ 20552306 (+) True G38091
TU56257 lncRNA downstream 305446 20303698 ~ 20345968 (+) False G38107
XM_043240450.1 mRNA upstream 27617 19954455 ~ 19960667 (+) True LOC122345916
XM_043240663.1 mRNA upstream 123333 19860951 ~ 19864951 (+) False LOC122346028
XM_043240664.1 mRNA upstream 123333 19860956 ~ 19864951 (+) False LOC122346028
XM_043240662.1 mRNA upstream 123333 19860960 ~ 19864951 (+) True LOC122346028
XM_043240658.1 mRNA upstream 128124 19837970 ~ 19860160 (+) False camsap1b
XM_043238764.1 mRNA downstream 40719 20038971 ~ 20047598 (+) True sh2d3cb
XM_043238763.1 mRNA downstream 40719 20038971 ~ 20047598 (+) False sh2d3cb
XM_043238759.1 mRNA downstream 42323 20040575 ~ 20047598 (+) False sh2d3cb
XM_043238758.1 mRNA downstream 42325 20040577 ~ 20047598 (+) False sh2d3cb
XM_043238762.1 mRNA downstream 42520 20040772 ~ 20047598 (+) False sh2d3cb
TU55947 other upstream 278358 19707338 ~ 19709926 (+) False nrarpb
unassigned_transcript_958 other upstream 570115 19418098 ~ 19418169 (+) True trnap-ugg_3
XR_006251073.1 other upstream 989005 18962322 ~ 18999279 (+) False msh3
TU55500 other upstream 1047389 18938813 ~ 18940895 (+) True G37626
TU56198 other downstream 145031 20143283 ~ 20151585 (+) False lix1
TU56199 other downstream 150169 20148421 ~ 20151585 (+) False lix1
TU56217 other downstream 186783 20185035 ~ 20513916 (+) True G38092
TU56241 other downstream 286371 20284623 ~ 20287317 (+) False LOC122345823
TU56242 other downstream 286371 20284623 ~ 20287277 (+) False LOC122345823

Expression Profile