RNA id: TU56266


Basic Information

Item Value
RNA id TU56266
length 2129
lncRNA type read_through
GC content 0.37
exon number 2
gene id G38113
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20326329 ~ 20707466 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gTGCTATGTAAAACTCAAATAAGTGTATGTATCTGCATTGTTGGTAGATGTGAACTAGGAAATGATgggaaatacatatttttatttgaaagataACTTACAGTGTTCTTCATACAAAATGCAACAACTCCCCTGAAAGGACaaactacatatatatacagaacaACCGCACCCAAAAATAGTctttagataaaaatataattcttaaAGCACtggaaataataattcaatgcaatgcaatttacAGCCGTTCATTTGGAGCAGCTTGGAAGGCCACCATTATGGGCACATACTGTCACAACACAGAAGCTGTATTTTATTAAGaatgctttataaatatttagccTCAGGTCCACATTAACACTGCTCCATTAGATAGTGAAATAAATATCACAAGCTGAACACATTACAAATCAGTCTACAAACCAAATGCTGATAATGCATTTTACGATATCAACACATTTTAATTCGAAATTTTGAATCAAAATACTGCTGTAGTAATATATAGATGTTAAACATTAAACGGCTTGTGATCAGGAATCCTCTGAGTACACTGTAATAATGCTTTCCCTTAAGGTTCAACATATAGTGTGTCTTCTATGAGCTCTACAAcagaacacatttgtttttacagtgacttggacaaaaaaaaaaagttaaaagtataaaatatttattagaataaGTTCCAGTTTAAAAGAGACTCTGTAatctactgaagaaaaaaaaaaaaaaaaagagattatcAATAAAGTTTTACTCAGCAAGTGTGCTCAGTACAACTCAGTACCAAAAAAATtcagacacatttttattttcggGAAGATATTATTGTACCCCTTACTGCTGAATTGCATCAATTCAACTAATTATGAAGCATTCTGACAAGATTTAGAAGGtaatagaataaaaagaaagaaattaagcttaaaatgaaatgtagcTCTTTTTGTGACTTAACATGCAGACAAAACCAATGGTTTTTCCACATCTGGTCACTGACAGGCAGTGTTTCGTGTCACTGGCTTCTCGGCGAGCGACCTTGAGCGACAGAATAAATCATATTCCCAAGTGTTTTTTGGACCATCAAACAGAAATATGGGGACAGAGTGACTTTCATAGAGAGCGATATATACCCTGTGAGAAACTTAggatatattattacaataaaaatctctataaataatgtagaatattcataaaaatatactttgacCTAGGTTGTtacttttactataataaaatagcTTCTCCTGTTAAATAATCCTCTCTGTTTGTTTAGGGTTGAGAAATCCTAGCTAACAGGTGCTTGTTTACACAGCTAGGCCTGATACACAAGGTAAATTTTCACAagttcttcatttaaaaaaaaaaaaaaaaaaacacttcacaaaaacatcaacaacaacaagatcaaaacaaataaaagtaattaaataaattaatagtgtCCTTCAACACTTGGCAggggtttttatatattacattcacCTTTTCCACAGTTTTCCATCGCAGTGTTCCTAGGCTATACGTAAGGCCGGTAGTTTCTGGTTTTCCATCTCTTCGAGCGAAAGcggaagaagaaaaacatgaacatgaGGAAGACACAGGAGAGGGCGTAGAGCAGCACGCAGAGACTCATGTCCACGCTGGAGAATCCCAGGCCCAGGAACGTCATGCCTGGCCTGGCTTCTATCTGGATGCCGGTGTGCTTCTCTCCTGCGCCAATGCTGTCACTCCTCTTCTGATGTTTCGGAGCGCTGTCAGGAGACGGCTTTAGGTTCTGGTTGAGGTGAAGGTTGCCGTTTGGTTTGGTTATGGCTTTGGGTTTGTCGGGAGCAGGAGGAACTGGCTCTGGATGGCTGTTGCTGGAGTATTTTGGGGAGATGTTTGAGACACCGTAGTGTTGTCTGAGGAAAGCGAGCACCATCTGTTCGTTCCAGACATGAAGGCCTTCTTGCTCCTCGTGGCATGTGGGACAGAGATCAGGAGTCGGCCACTGAGTCTTAGGAAACATGGGGTCCTCGCTCATTGAACCTGCAGAACAAGAGCAATCAGCTGTGAGGGTAACGTCTGCTAGCATGTTTAGGACAACTTTACATTTATAGTTTGGACATGAAAACATAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56265 lncRNA upstream 1774 20322660 ~ 20324555 (+) True G38112
XR_006251044.1 lncRNA upstream 5911 20319842 ~ 20320418 (+) True LOC122345857
TU56081 lncRNA upstream 328077 19988284 ~ 19998252 (+) False col27a1b
TU55996 lncRNA upstream 452185 19873242 ~ 19874144 (+) True G37958
TU55992 lncRNA upstream 458931 19794443 ~ 19867398 (+) True G37956
TU56273 lncRNA downstream 37092 20744558 ~ 20746880 (+) True G38118
TU56422 lncRNA downstream 179618 20887084 ~ 20887666 (+) False pappab
TU56426 lncRNA downstream 231367 20938833 ~ 20943113 (+) True G38199
TU56438 lncRNA downstream 238879 20946345 ~ 20950998 (+) True G38209
XR_006251063.1 lncRNA downstream 273561 20981027 ~ 20999088 (+) True LOC122345965
XM_043240325.1 mRNA upstream 14879 20308522 ~ 20311450 (+) True LOC122345838
XM_043240304.1 mRNA upstream 29107 20284617 ~ 20297222 (+) True LOC122345823
XM_043240314.1 mRNA upstream 47140 20232184 ~ 20279189 (+) False rxrab
XM_043238931.1 mRNA downstream 26156 20733622 ~ 20739157 (+) True LOC122345098
XM_043240330.1 mRNA downstream 66933 20774399 ~ 20783388 (+) False LOC122345842
XM_043240328.1 mRNA downstream 66936 20774402 ~ 20783388 (+) True LOC122345842
XM_043240327.1 mRNA downstream 73900 20781366 ~ 20783388 (+) False LOC122345842
XM_043240329.1 mRNA downstream 73900 20781366 ~ 20783388 (+) False LOC122345842
TU56241 other upstream 39012 20284623 ~ 20287317 (+) False LOC122345823
TU56242 other upstream 39052 20284623 ~ 20287277 (+) False LOC122345823
TU56198 other upstream 174744 20143283 ~ 20151585 (+) False lix1
TU56199 other upstream 174744 20148421 ~ 20151585 (+) False lix1
TU55947 other upstream 616403 19707338 ~ 19709926 (+) False nrarpb
TU56423 other downstream 142769 20850235 ~ 20859400 (+) False pappab
XR_006250981.1 other downstream 339474 21046940 ~ 21067177 (+) False cntrl
TU56565 other downstream 410629 21118095 ~ 21118839 (+) False tecta
TU56600 other downstream 473073 21180539 ~ 21200612 (+) False LOC122345215
XR_006250979.1 other downstream 554088 21261554 ~ 21270874 (+) False adora2b

Expression Profile