RNA id: TU58288


Basic Information

Item Value
RNA id TU58288
length 281
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G39375
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25016561 ~ 25016841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAATCAATGCCTAATGATGTCACAGCGTCAGCTGTCTGACTTTATATCATTGAACAACAACACCTAGCTAGTCCATCAGAAAAGACTCAATGGTTAAACAAAGGAGCCATTAAGGCACATGATGGTTTGTGGACGTCATCGGATGGTCGTCCTGTGTTATCCTCATCATtagctgtttctgttttgacCCAAATTCATAGTCCATCCCACTGTGGagacaaaaaaatgtcttgtgcaTTGTAATCCTGGTGGCAGCCTTTCATGCCACATTTGATCTCA

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58279 lncRNA downstream 91614 24924707 ~ 24924947 (-) True G39366
TU58278 lncRNA downstream 103622 24912646 ~ 24912939 (-) True G39365
TU58270 lncRNA downstream 153370 24861943 ~ 24863191 (-) True G39357
TU58269 lncRNA downstream 170198 24840745 ~ 24846363 (-) True G39356
TU58223 lncRNA downstream 257934 24754204 ~ 24758627 (-) True LOC122345923
TU58290 lncRNA upstream 2408 25019249 ~ 25019491 (-) True G39377
TU58301 lncRNA upstream 34340 25051181 ~ 25051518 (-) True G39384
TU58318 lncRNA upstream 158467 25175308 ~ 25176349 (-) True G39401
TU58377 lncRNA upstream 281035 25297876 ~ 25299229 (-) True G39456
TU58379 lncRNA upstream 282682 25299523 ~ 25299916 (-) True G39458
XM_043240627.1 mRNA downstream 113272 24814609 ~ 24903289 (-) False LOC122346005
XM_043240626.1 mRNA downstream 113272 24814609 ~ 24903289 (-) True LOC122346005
XM_043240635.1 mRNA downstream 233913 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA downstream 233913 24759478 ~ 24782648 (-) True taf6
XM_043240457.1 mRNA downstream 257893 24754202 ~ 24758668 (-) False LOC122345923
XM_043239176.1 mRNA upstream 214394 25231235 ~ 25263128 (-) False zfpl1
XM_043239175.1 mRNA upstream 214394 25231235 ~ 25263124 (-) True zfpl1
XM_043240265.1 mRNA upstream 286634 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA upstream 286634 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA upstream 286634 25303475 ~ 25446660 (-) False LOC122345796
unassigned_transcript_970 other downstream 21329 24995162 ~ 24995232 (-) True trnag-gcc_23
unassigned_transcript_967 other downstream 24466 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_964 other downstream 83583 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_963 other downstream 89510 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_962 other downstream 92341 24924148 ~ 24924220 (-) True trnak-cuu_5
TU58333 other upstream 265045 25281886 ~ 25282286 (-) True G39413
TU58432 other upstream 545133 25561974 ~ 25568686 (-) True LOC122344921
unassigned_transcript_987 other upstream 860830 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_988 other upstream 870517 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_989 other upstream 871673 25888514 ~ 25888596 (-) True trnal-aag_30

Expression Profile