RNA id: TU59338


Basic Information

Item Value
RNA id TU59338
length 3580
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G40083
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 28326897 ~ 28330476 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGCAATGTGAAGAGCAGACATGGCCAGCATCACCAAACACAAATGGGTTTTAATAACAGGCACAAAGACGTCTGTTTGGAGAGAATTTTGAACACTGACTCAAATTAAAGGACACTTGAAATCCAACTCTTGATGCTGATGTAACCGTAATGCTGATGACCATGGTGCGTTTCtcaaatttaaataactttcaTAAACATATCATTGTGTTTAATGAAACTCTTTAAATATACAAGGCATTTTACTGGTACACGTTTTCACATCACTATTTACAACCGGTCAAGACATTCATATTAACCTGTAATAAAGCTCTTGATACAATTCCATCAGTTTGTTTTCTTACAGTTTTTCCACCATCTGAccaacatttcaaataaatataattcgaCTTTTAGGACTCCCAATAGTGAGCACTAGTCAGGGAAGAAACTCTGACTCATCGAACGCTGATGTTTTGCTGTGCCCGTCCATATTTTGACACCTGGACAAACATATTGGCAGGCCAAAAACAGCAATGTGTTTTCTTCACCTGTCCAATGCTGATGCATGCGAGCTCTGAATTTCATGGATTTTAAgacacattcaaaatgtttggtACAAACTGGGAAGTTTAtgaatttcacttttaaaactgtgatttctttttttttttttattgcgagATATACTGTGATCACATTCTCCTCTCCTTGGGACTGCCATAGAATAAATGCACTGTATTAACAAacaattacatacatatattacattattataacatttagtTACAATCATGTCCCAACTGCATTAATGGCAGTATTTCCATAGCATGGAAAACTGTGAGGTGTGACTTAGACATTCTGTCATTGAatggcaaatatatatatttctaaagtgttgtatttttgttcttcAACTGGAGCAATGGATAAaagaataaacagaaaataaaaaataatataagagCCCCGATAATCAAATTTTACACTTATAAGACCATTGTACAAATAACttacataaacaataaaaaatataacttacAAAAGTATAACACTCTCAATAAATAGTTCTACTATGTACACTATTATATGTCGCTAATAGACGCAAACCACTAACATACGAAAATATGGAAGCAGCAAACATTACAGGCATGAGGTACAGCAAGAAATCCTACGGCGCTTACAGTAGTGTGTGTCAAACAGCCCATTGGCAACTTCATTTAACAAGCCAACAAACACTCTCAGACCTGTTACAgatgtcaaaaataaagcagaaatgatGAGTATTTGGCGTAATTGCACTCAGCGTTTTGGATCGCTGATTTGCACATAGTGATGGAGAAACAGAAGTCTGAGAAGAGTGATACTTCAGGCAGTTAGTCGGTACATTTCtgaagaactgaaaaaaaaagaagcattggCTGACAGGCCTCACAAAACCTGTTCGTGCTAACTTGGCGACATGGTTGCTGATCAGTTTTGCTGTCCATCTTGGCAATAAATGCTGACTAATGTTATCTTGAGTACAGTTACATAATTTCAGGTAATAGTAACTTAATACACTTGCTCTCCCAAGAATATATAGCAAACAAAATCTTTatacattgttattattagaattttttttactctcgtgctttgtatagttttttttttttcctgttgtagttccttcataataataataacaatactacaTCCTTCGATCTAACTCACAAGAtggctaattaaaaaaaaaaaaaaaatcaacaacatccaaacaaacaaacatacatacatacatacatacatacaatgaCCCATTTAAAGTCTTAATTTTCACACTTTctgaaacataaatattaaagccAGTTTTTCCATGATCCCAAAGGTTTGTTCAGACAGATCAATTCAATAAACATGTTTCCACATGTCACATTGCTTTGCTGTTTACGACAAAACCGGACGTGAAGCAAGTGGAACCACAATAATCATCAGTAATCACAGAGGCATATGATAATATCATACAGTAAAAGGAAAATCAAACATTACTAATTTCACCACAAACACATAATCCCTCCCAAATTGTCCTGCCTAACAATAGCAGCGATTTTAGAAGTTTTAACTTTCGTTCGACGGGCTACCGGAAAAAGTGCAGCAACTGAGGTCATTAATACAAATACTGACTACTGGTACATAagattatgtttttttcatttattttatcttttctttagaaatatatatgacTGCACCTGTGATACTACAAGcgcaataaaagaaaacatgggCATCCGATCATGAAATCTTGGTGCCACATACATGAGGactccaaaaaaaagaagaaaaaaaaactaaagaataaTATGGTTGTCCGACTTTCCTCCAGATCTTTTTTCCTTAATCATAAATGTCTAAGTTACTATACTTTAACTACCATACATCTACAGTTGCACAAAGTGGTGccaattattaaaacatcagGCAAAATAATCTTTAATGCTTTAATCTCTAACACAACAGCCAACGTTCAAGACATCCTTAGCCTTGGCCTGATCGCACTAAATTAATCAATTCAAAGAGAGGACGACAAACCttatcagaaatgttttgtgttgaATTTTTGCATCTGGCAACCTCTTCAGCAGGTGAGTACCACAGTAACAgtttaattatttcttaattatttctttttgcttAAGCATTATGGCTTGTGGCATTTTGAACGAACAGCCGATATCAGGGGATATCACTGTAGACCGGGGTTTCGGGTTAAATTAAGTTCTTCCTGAAGAGTTTAGCTACaatcctaattaaacacacctgaaccagctagtCAAGGTATTTAGGCAGGTGTAGGAGTAGGCCGCAACTACAGTCTTCAGGATGGTGGCACTCCAGAAACAGGTCTGACACATCTGATACAGAGAGTCAAACCTGGAGATTCTGACCTTAGTGAGAAGCTAGTTAAAACCATTTAAGGCCATAAGGGGAAGAGGTTTGTTTCAAGAAGTAGTTCACAGTTGGTAGCCAAATATTacacaaaagaacaaataaattaaacatactgtatatagagGCTGCTTAAGTTCttttttgaatgcataaaagGAATACttctcccaaaaatgaagatttgctGATATTTTAGTGTCCCACGGACCATTtagatgggtttgtttcttcatcagaagagATTTAAAGATCCTcattggatcctctgcagtaaatAGGTGCCATCAGAattagagtccaaacagctgataaaaatatcacagaaatgcacaagtaatccacacaacaGTTCtacagttaacatcttgtgaggccaatgctgtgtgtttgtcagaaacaaatccatctttaatatgttttaacttCCTACCATTGCTTCTGGTTAAAACATCAGAATCCATAACTGACTGCCTGCATCAGTCCATAaaccataataatgcttcctccagtgaaaagtcCATCACCTGTTGTGACGGAAAAATCCACCCACATTTTAGAGCGATTTTGGACTTTTTTCGGTTGTAAATGGTGCTCGATCTGTGCACATTTCTTACCTAATTCAGATCAGATGActtttgtgtgaatgtgtgtattttagattaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59336 lncRNA downstream 33960 28292726 ~ 28292937 (-) True G40081
TU59333 lncRNA downstream 71690 28254921 ~ 28255207 (-) True G40079
TU59330 lncRNA downstream 80232 28246418 ~ 28246665 (-) True G40076
TU59328 lncRNA downstream 83242 28242661 ~ 28243655 (-) True G40074
TU59308 lncRNA downstream 145898 28180624 ~ 28180999 (-) True G40058
TU59464 lncRNA upstream 993506 29323982 ~ 29325074 (-) True LOC122345120
TU59465 lncRNA upstream 993638 29324114 ~ 29325074 (-) False LOC122345120
TU59585 lncRNA upstream 1316141 29646617 ~ 29647013 (-) True G40264
TU59587 lncRNA upstream 1354652 29685128 ~ 29685727 (-) True G40266
TU59589 lncRNA upstream 1470718 29801194 ~ 29805802 (-) False G40268
XM_043238485.1 mRNA downstream 412308 27910228 ~ 27914589 (-) False LOC122344872
XM_043238477.1 mRNA downstream 412308 27910229 ~ 27914589 (-) False LOC122344872
XM_043238478.1 mRNA downstream 412433 27910227 ~ 27914464 (-) False LOC122344872
XM_043240825.1 mRNA upstream 6925 28337401 ~ 28683169 (-) True LOC122346138
XM_043238409.1 mRNA upstream 613265 28943741 ~ 28944764 (-) True LOC122344834
XM_043240766.1 mRNA upstream 844475 29174951 ~ 29270700 (-) True brinp1
XM_043239775.1 mRNA upstream 972667 29303143 ~ 29323685 (-) True LOC122345544
XM_043239773.1 mRNA upstream 972667 29303143 ~ 29323683 (-) False LOC122345544
TU59335 other downstream 62193 28255828 ~ 28264704 (-) True G40080
TU59237 other downstream 431443 27889123 ~ 27895454 (-) True LOC122344874
TU59072 other downstream 928177 27382921 ~ 27398720 (-) True isca1
unassigned_transcript_1081 other downstream 2215495 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 2217327 26109500 ~ 26109570 (-) True trnag-gcc_63
TU59455 other upstream 1130109 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 1286523 29616999 ~ 29655061 (-) False eng
TU59650 other upstream 1595909 29926385 ~ 29926833 (-) False LOC122344966
TU59790 other upstream 1761473 30091949 ~ 30093513 (-) False rnf170
TU59791 other upstream 1761473 30091949 ~ 30093513 (-) False rnf170

Expression Profile