RNA id: XM_043238155.1


Basic Information

Item Value
RNA id XM_043238155.1
length 4910
RNA type mRNA
GC content 0.47
exon number 8
gene id fibcd1b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6522536 ~ 6591580 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAAATGAACCGCTCGTTTAAAAACAACCGCGGTTGTTGCATCGCGTCTCCGAATTCAGTTTGACTTCCGTCGCTCGCCCGGTCTTTCGTGACGGGTCCTTTTGATGCGCGTTGAGCTACCGAGTGGGAGTTTCTTAAACTAGACGAGGGGTGTGGAAAAGTCGTATCAGTGCCGACGGTGTCTGGGAGCGAAACCGAGCGCGCACCGGGAGCGCGCGCACCGGACAGCTTCTGACGCCGGAGGAGAGCGAGGAGCGAGTAGGAACCCCGTTCATCTGCCCTGCCGCGCCAGCCTTGTCAGATCGAGACATCCCTCGCCCTCTGTCCGGTAAACTAGGACACCCTGGGAAGCGGATTGAATTCTCTCCTCAAATCACAACACCTTCGCCGCCGCAATCCCTCCATCCCGCGGCTCAGGAATACAAAGTTGTATCACTTTTAAACGACTCTCCTGGACTGAACTCTTCTggttttttgacaaaaaaaacatcttttttttgtgtgtgtgcgtgtgcgtttTGAGTTGGCTTGGATATGCGCGCGCGCGTCGACTTGATTCCCGCCGCTACTTAGCGTGGAATATCCGAGGACTTTACTCAACGCtccagaagaaaagaaaaatactttgAAGTGCTATGGGAATTTGAGgagtttgtttatttagctattttccTTAAGATGCGTGTGGGGCGAGAGTCTTCGCCGCCCCTTTTTAGACCagaattagtcagcgtggtcccGGAGTAGAGGCTAGATCGGTGTCTTCTCGATCTCACGCACTCTCCTCACTCTCCTTTTCTTCTTCCCCCTCCTAAGGTTATTTGTATATTTCCGTGGAATAACTGATCTGGAAAACGACTGAACGACAAAGTGTCTTGCCTCTCCtccccccaccaccaccaccaccgccGCCTGTAACTGACAGGCGGTTCAAGGTTTGTTCTTCTCCGGAGAATGCTCAATGATCGATGGGGAATCATGAACAGCTCACCGGAACTCGAAGACGGACAGCGGGGCAAGAATCAGACATTCTGTGAGTGTGTGCCCAACTCTTCTCAGCTCAAACATCGCTGGTCAGACTCAGACACAGTCAGACAAACACCGCCCAAGAGGATGAGTTGTAGCTATCTGCTTTGTACCATCCTGCTTTTCGTGGCCGTTCTGCTCGCAGTCACAGTGACGGGAACCATTCTTCTCATGAACCACTACCAGGCCCCGCCCATGTCGGACGGCCCCCCTCATATTAGCACAAACCAGGACGAAGCCAATGCGTTGGTGACAGTCGAGAGGGGTGATGGATCACGCATCAATATCTTCATCGACCCCAACTGCCCTGATTATAACAGTAATTTCCTGCGGCTCGAAGGCGTGCAGACGTCTTTGCTGCATTCGCTCACCGACCACGATACGGATCTCAAGTCCGTCAAAGGTCAGGATCGAGCGCTATTGGTCAACTTGGCAGAGGAAGTTGCTAAGCTGTCTGCCCACGCGGGACAGCTGAAGATGGACTATGAGTCTCTCAGAAGAGGACAAAGCAACCTGGGACAGGATCTGAATACACTGCAGACTGAACAGAGCAGACTTATACAGCTGCTGTCCGAGAGCCAGATTAACATGGTGAAGGTTGTCAACTCTGTGAGCGATGCTCTAAATGCCATGCAGAAGGAAACTGGAGGTTTGAAGGCCAGGGTGAAGGCTGACCTGCAGAGGGCGCCAGTCAGAGGAGTCCGTCTTAAAGGCTGTGCTAATGGATCCCGTCCACGGGACTGCAGTGATATATACGCTAGCGGTCAGAGAGAAGATGGCATCTACTCTGTTTTTCCCACTCATTATCCCGCCGGCTTTCAGGTCTACTGTGATATGAGCACGGACGGAGGTGGCTGGACGGTAATCCAGCGGAGGGAGGATGGGTCTGTGAACTTCTTCAGGGAGTGGGACTCCTACAGGGAAGGATTTGGCAAAATCACTGGAGAGTACTGGCTCGGGTTGAAACAAATACATGCTCTCTCTATCCAAGGCAACTACGAACTGCGTATAGATCTTGAGGATTTCGAGAACAGCACAGCTTTCGCACAGTATGGTGTGTTTGGAGTTGGACTGTTCTCTGTTGACCCCGAGGATGACGGTTACCCCCTCACCATCGCCGATTACACCGGAACCGCAGGAGATTCGTTGCTGAAGCACAATGGAATGAAGTTCACCACAAAAGACAGAGACAACGATCACTCGGAGAACAACTGTGCTTCTTTCTACCACGGCGCCTGGTGGTACCGTAACTGCCACACGTCCAACCTGAACGGCCAGTACCTGCGCGGACAGCACACCTCTTACGCCGACGGGATCGAGTGGTCGTCCTGGACCGGGTGGCAGTACTCGCTaaaattcacagaaatgaaaatccGGCCAACGCGCGACGAGCGAGAAAGCAAGTAATCGcacaaaaagtcaaatttaaatgtaaggaaaaaagtttaaaagactTAAATGCTGTGCTTCGTGTGTGGAAAACAAAAAGGACGGTGGTTGTTGCTAATCAGAAAAAAGAGCTTTGTGTTGTCCTGTTTATTAATTTGGCAGAAAAGTCACACTGTTGTGTGGCCGTGCTGTGAGTCCCTCCATATGACAATCTCTTTATCATCGGGCCTTGAAGTTTCTTTACCCCCCCCCAGCTGTCGAATCTCAGCTCACCACTGCACTCAATACTGTGAGTCACACTTCgattctgacaaaaaaaatgacactgaaTCAAGGATCCTATTATCTTGCCGCCGGTTAGGGAATGAATTAATGGAGGACTATGTATGACAAACGAAATGCTGGAACGGTTCCTTCTGTCAGCAAAAACCGTTTCCGTTTTCCCTTTTATTGTTTAACACGCAATTAATACGCCAAACGCACATGCCACAGCCAAATCTCCGCTAAGTCTTCGTTTTTGAATGAGGAGGCTAGtacaaaagaagaaagtgtGAAAGACGGGAgggagatgagagagagagaggcggtCTAAGAGGAGAGCGGTGCAAAGGTTTCTGTGGGAGTTTGTCTCTCATCTGTCTGACAGGCCATTAGTGAGCATATTGGCCACTTTGTCTGATCGCCATTGCCAAGTGATCATCAGCCAGGCTCTTCATCTCACACGTACGCAGATGGAGGccgctcgtgtgtgtgtgtgcgcgagcgaGATGAAAGGAAAATGCGATATTGTCTCGTCTCCTTCCCGAGTGTGCGTTTCTGACTCAGTATAAGTTTGAGTGTTTTCGAGGAATCTCTTTCTCGGCCGGAGAAGCCCGCTCGAGTGTGTTTACTTAGCGCTCGTACACACGTCGCTTGTTGTATGCTAATTCAAACGAGCCGCCCCGTCCTAGCGAACGCAGACGCGTATATCAGCTCATTCACTgccgtctctctctccagcTCACTTTCCAAAGGTCAGACATCTCAAACGTGAATATTGTTCTTCTTTCCCCTTGTGCTCGAGCAGCTCCCTTCATCTCTcgccctttctttttttttccctcctggTGGTCTTCTCGTTTGTTCTCCCTCCGCTCTCCCTTCGCTCTTTGGGTTTGTTTTCTCGGGCTCCCCCGTGGAAGTGGAAAAGGTCGACATGTCATTTAGTACAATTACTCTGCCCATTGTTCTCTTCTTTgctcttttctctcacttctgtTCTTCCCGCTTCTGTTTTTGTAATTCATCTCTCTCTTAAacctaattatgttttttttttttttttaattcacattatCGTAACGATGACAATTTATTTGTACTTTGCTTAAATGATGTCATTTTGAATTCAAAACAGAGagttttacatatttaacatgATTAACGCACTAACAAAACTTTTGTTCCCTCCCTCGcttgtttgtgctttttttttcacgtgTAAAGACGAGCAGTTTTCATGCTGACTTGTGAATGAACTTGCGCAGCACTGATTCGTTCATCTTGGATTTCGCAGTTTtgagttttacttttaaaaatgttaaaaagagcTTTAAGATACGTGTAGATTTCATGTACAGTGTGTATGTTTTAGAGACTTTTAGCGCATGTGAAACGTTTTCTTACGGGAAATCGACAAAAGCACACAAACGAAGCTATAGAAAAGATCCCTCGATGTGTCTTGATATCGGCTGTAGTCACGTGACTGGGATGGAAAGGACTCTTGTTTTAAATTCTGGTCTGCCAGGAGGGGAGTTGAAATCCATTAAACGAACACCAACGAATAATGAGCACATTACTCGAGAAAATATGTGGGAAGACGACTGTAAAAGCAACATTACGGGATGTTGTCAAGACTCTTAAATGGACACAAGTGAGTGCTCATCCTTGTCTCTGGAGTCGCCTCTAAGTTTGCACCACTTTAACTACAAAGTTGCCTCTGTCAGTTTGTGTCTTTGTTGTGTAttttctcttgttctcttttctctttttttcttttccccctCCTCTCATTCTGTGGAATTACATCACAGTCGGCCCCTTTTCTCTGTCACCATTTGCTTCAAAGTTAACCATGCCGCCTGTTCAGCTGTCAATAATGTTTCTCCAGTGCGTTGCCATGGCAATGATCCCCTGAACAAAAGCTAACAGGCTCAACAGAAGAACGTTGGATAGAGATGTTAAATGATGTAACTATGTCAAGAAAGGACGAAAAGAGTGCACATTATAATGGGACAAAtgcaatttgaaataatttgtaattaatggTCTCTGTGAGAATGagtgcgtgcgcgcgcgtgactgaatgaaaaagaaaatatacttgtaaagaaaaaagtaaattgtTCTTTCCGTGTATGACATTGGCTCTTCATATTGtgtgcatatgaaaaaaaaaacaaataaataacatataaataaattgatttctGCAATGGCACTGCATGGATTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49603 lncRNA upstream 28006 6475701 ~ 6494530 (+) True G33665
TU49604 lncRNA upstream 28006 6491552 ~ 6494530 (+) False G33665
TU49605 lncRNA upstream 28006 6491552 ~ 6494530 (+) False G33665
TU49607 lncRNA upstream 28006 6491552 ~ 6494530 (+) False G33665
TU49602 lncRNA upstream 30550 6473347 ~ 6491986 (+) False G33664
TU49635 lncRNA downstream 25696 6617276 ~ 6696642 (+) False dab2ipb
TU49666 lncRNA downstream 329165 6920745 ~ 6921639 (+) True G33708
TU49676 lncRNA downstream 338067 6929647 ~ 6930785 (+) True G33712
TU49702 lncRNA downstream 389137 6980717 ~ 6981993 (+) False kank1b
TU49863 lncRNA downstream 542714 7134294 ~ 7134884 (+) True G33844
XM_043239280.1 mRNA upstream 267196 6247795 ~ 6255340 (+) True hexb
XM_043239281.1 mRNA upstream 267196 6247797 ~ 6255340 (+) False hexb
XM_043239165.1 mRNA upstream 360051 6105795 ~ 6162485 (+) False arhgef28a
XM_043238523.1 mRNA downstream 47667 6639247 ~ 6648360 (+) True zgc:63972
XM_043238316.1 mRNA downstream 60451 6652031 ~ 6762808 (+) True dab2ipb
XM_043238318.1 mRNA downstream 90259 6681839 ~ 6762808 (+) False dab2ipb
XM_043238317.1 mRNA downstream 104526 6696106 ~ 6762808 (+) False dab2ipb
XM_043238320.1 mRNA downstream 124658 6716238 ~ 6762808 (+) False dab2ipb
TU49600 other upstream 48345 6473347 ~ 6474191 (+) True G33664
XR_006250986.1 other upstream 267890 6247795 ~ 6254646 (+) False hexb
TU49351 other upstream 433974 6087262 ~ 6088562 (+) True G33494
XR_006251052.1 other upstream 543952 5959835 ~ 5978584 (+) False tnpo1
TU49128 other upstream 872651 5604333 ~ 5649885 (+) False G33355
XR_006251060.1 other downstream 201785 6793365 ~ 6824304 (+) False si:dkey-34e4.1
XR_006251059.1 other downstream 201785 6793365 ~ 6824158 (+) True si:dkey-34e4.1
XR_006251123.1 other downstream 358319 6949899 ~ 6949965 (+) True LOC122346228
XR_006251115.1 other downstream 358631 6950211 ~ 6950281 (+) True LOC122346219
XR_006251114.1 other downstream 359106 6950686 ~ 6950758 (+) True LOC122346218

Expression Profile