RNA id: XM_043238188.1


Basic Information

Item Value
RNA id XM_043238188.1
length 2252
RNA type mRNA
GC content 0.47
exon number 13
gene id nelfb
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8689817 ~ 8696328 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGCACAGCTAGGAAGTCTGCGAATACGGATAACGGAACAATGCAAATCTAGCCCacatttgttgtgtttgtgctgtCAGCGCATTGCATTTCGTTTTGTTTTGATGCGGTTAAAAAGTGACAGCCAAAATGTTCGCAGGTTTACCGGAGCTGGGAATATCCAATGGGGAAGATCTGAAAGAAACTCTCACTAACTGTACAGAACCCCTAAAAGCCATCGACCAGTTTCAGATGGAAAATGGCATATTGTTGCCAACCCTACAGTCTGCATTGCCTTTCCTGGACCTTCACGGGACTCCACGGCTAGAGTTTCATCAGTCAGTCTTTGATGAACTTCGAGAAAAGCTGATGGAGCGTGTTGCCACAATTGCAGAGGGCAAGGAAGACGACAGatacacaaagCTGGAAGAACTTCTTGAAAAAAGCTTCCCGTTGGTGAAGATGCCATCCATACAGCCTATTGTCATGCAAGTGCTGAAACATCTGCCAAAGGTACCGGAAAAGAAGCTGAAGCAGGTGATGGCTGATAAAGAGCTGTACAAAGTCTGCGCTGTGGAGGTGAAACGGCAGATTTGGCAAGACAATCAGGCTCTTTTCGGGGATGAGGTGTCTCCTCTACTGAAACAGTATATTGTGGAGAAGGAGGCGGCTCTTTTCAGCAATGACCTCTCCATCCTTCACAACTTTTTCAGTCCTTCACCCAAAACACGACGACAGGGGGaggtGGTGTTGAAGCTGACTCAGATGATTGGGAAGAATGTGAAGCTCTATGACATGGTACTACAGTTCCTGCGGACGCTGTTCCTGCGCACGCGTAACGTTCACTACTGCACCCTGCGAGCTGAGCTGCTCATGTCCCTCCATGACCTCGACATCAGCGAGATCTGTTCAGTTGACCCCTGTCACAAGTTTTCCTGGTGTTTGGATGCCTGCATCAGGGAAAAGTTTGTGGATGCTAAACGGGCCCGAGAGCTGCAAGGTTTCCTGGATGGGGTGAAGAAAGGGCAGGAACAAGTATTAGGTGACCTGTCTATGATCCTCTGTGACCCATTTGCCTGTAACACACTAGTGTTGAGCACCGTGAGGAACCTTCAGGAGCTGTTGAGCCAGGACGCCTTACCCAGAGACAGCCCCGACCTTCTCCTTCTCCTGCGGATGCTGTCTCTCGGCCAGGGAGCCTGGGATATGATTGACAGCCAGGTTTTTAAAGAGCCACGAATGGATTTGGAGGTGGTAACCCGCTTCCTGCCTGCCATGATGTCAATAGTGGTGGATGACTACACTTTCACTGTGGAGCAGAAACTGCCGAGTGAGGAGAAAACCTCTCTGACGTACCCCACTGCGCTGCCTGACACCTTCTCAAGGTATATACAGGACAACAGGGTGGCGTGTGAGATCGGTCTTTATTATGTGCTTCATATCGCCAAGCAGAGgaataaaaatgctttacagCGTCTTCTGCCTGCGCTGGttgATACCTATAACGACATGGCATTTGGAGACATCTTTCTCCATCTTCTCACTGGTCATCTGACTCTGCTCTCTGATGAATTTGGATCAGAGGAGTTCTGCACTGCAGTCTTTGAGAACTTCCTCCTCACATCTTTCTCTAGTAAGGAGAATGTCCACCGACACTGCCTTCGCTTGCTGAATCATCTCCATCAGAAGGTGTTTGCCTCCTACCTAGAAACATTAATGAAGACACTTGAACCACCAAAACAGAGCAGTGAGTCAGTGAAGGAGCTGTACACCCTGTTGAAGGAGAAGCTCGAAGCTTCTAAGAAAAGCCCCCCGGAGCCAGAGGAAGCCCCTTCTCTGGATCTCAGCCTTCATCCTGTTACTGTCCCCTCCACCCCTTCCACCCCCACAACCCCTCTCTGAGAGACTGGACGCCCCGGCAACAGTAATCATGTTCACACGGGAATAAACAACAAGCCTTATGTCACGAAGACTGACATGAACGTGTGTAAAATCCTACCGTGCTGGttataaatgttgttgtttttcttcttattttcttttataagggtcattttaaaagccttttccatttttcaattttgttgGCTCAgctcttttctcatttatatgCTTCTTTTAAGAAAACCTAGTCTTGTTTCATTGTTGTATGAGCTCAGATGCAGTCTCTTATGTACAGCATTTCATGGTTGAGTATGTTTTGCTTAGGATTGTGCCGGTGACAAGCCctagtgtaaataaaataaatggtaagAAAGTTTACAGTCCTTGA

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15180 COBRA1, NELFB; negative elongation factor B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50752 lncRNA upstream 47136 8642191 ~ 8642681 (+) True G34449
TU50715 lncRNA upstream 124321 8564645 ~ 8565496 (+) True G34418
TU50681 lncRNA upstream 150099 8532539 ~ 8539718 (+) True G34409
TU50665 lncRNA upstream 216472 8472435 ~ 8473345 (+) True G34398
TU50654 lncRNA upstream 229578 8456788 ~ 8460239 (+) True G34387
TU50787 lncRNA downstream 166518 8862846 ~ 8864201 (+) True G34466
TU50795 lncRNA downstream 177767 8874095 ~ 8874695 (+) True G34470
TU50798 lncRNA downstream 241937 8938265 ~ 8939370 (+) True G34472
TU50809 lncRNA downstream 297568 8993896 ~ 9001220 (+) False G34480
TU50825 lncRNA downstream 297568 8993896 ~ 9001220 (+) False G34480
XM_043238565.1 mRNA upstream 199 8685958 ~ 8689618 (+) True LOC122344920
XM_043238925.1 mRNA upstream 4594 8677501 ~ 8685223 (+) True LOC122345092
XM_043238919.1 mRNA upstream 16700 8647750 ~ 8673117 (+) True grin1b
XM_043240472.1 mRNA downstream 3393 8699721 ~ 8702028 (+) True LOC122345932
XM_043238583.1 mRNA downstream 5958 8702286 ~ 8704230 (+) True LOC122344932
XM_043238582.1 mRNA downstream 5958 8702286 ~ 8704230 (+) False LOC122344932
XM_043238171.1 mRNA downstream 8879 8705207 ~ 8712776 (+) True arrdc1a
XM_043240451.1 mRNA downstream 17524 8713852 ~ 8724306 (+) True ehmt1a
XR_006251032.1 other upstream 385666 8289720 ~ 8304151 (+) False snx19a
XR_006250944.1 other upstream 679218 8001578 ~ 8010599 (+) False spns3
TU50226 other upstream 891849 7754074 ~ 7797968 (+) True p2rx1
XR_006251015.1 other upstream 1123241 7558940 ~ 7566576 (+) False svopb
TU49925 other upstream 1243601 7426981 ~ 7446216 (+) False G33890
TU50789 other downstream 171185 8867513 ~ 8871518 (+) False man1b1b
TU51316 other downstream 1100062 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU51450 other downstream 1367889 10064217 ~ 10118126 (+) True fam219ab
TU51709 other downstream 2032790 10729118 ~ 10731052 (+) False osbp2b
XR_006251113.1 other downstream 2230495 10926823 ~ 10933163 (+) False senp3a

Expression Profile